Variant report

Variant	rs831685
Chromosome Location	chr12:104026933-104026934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:103890051..103890606-chr12:104026106..104027016,2	MCF-7	breast:
2	chr12:103968812..103969756-chr12:104025690..104026992,7	K562	blood:
3	chr12:104026409..104027005-chr12:104162186..104163033,2	MCF-7	breast:
4	chr12:103968730..103969710-chr12:104025919..104027004,17	MCF-7	breast:
5	chr12:103946561..103948004-chr12:104026087..104026962,5	MCF-7	breast:
6	chr12:103276730..103277595-chr12:104026088..104027014,3	K562	blood:
7	chr12:103968837..103969670-chr12:104026108..104026999,6	MCF-7	breast:
8	chr12:104026135..104027046-chr12:104165031..104165600,2	MCF-7	breast:
9	chr12:103979507..103980822-chr12:104025776..104026985,11	MCF-7	breast:
10	chr12:104000010..104000726-chr12:104026150..104027124,2	K562	blood:
11	chr12:103979608..103980912-chr12:104026115..104027121,4	MCF-7	breast:
12	chr12:104025253..104027244-chr12:104037198..104039505,2	MCF-7	breast:
13	chr12:104026169..104027011-chr17:56179668..56180510,2	MCF-7	breast:
14	chr12:103942134..103943335-chr12:104026188..104026936,4	MCF-7	breast:
15	chr12:104026094..104026958-chr12:104035452..104036525,4	MCF-7	breast:
16	chr12:104026106..104026994-chr17:77396890..77397621,2	MCF-7	breast:
17	chr12:103342700..103343279-chr12:104026379..104027168,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1993919	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs703612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs703613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs703617	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs703620	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs703622	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs703626	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs703628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs703629	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73187882	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs831431	0.81[ASN][1000 genomes]
rs903185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052275	chr12:104008918-104044241	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104023600-104033800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:104026600-104028800	Weak transcription	Spleen	Spleen
3	chr12:104026800-104027000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:104026800-104027000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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