Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1347732	1.00[ASN][1000 genomes]
rs1595445	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1595446	1.00[ASN][1000 genomes]
rs1595448	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1595449	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1595450	1.00[ASN][1000 genomes]
rs2448980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577654	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577655	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577658	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2577660	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2623409	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2623410	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2623412	1.00[ASN][1000 genomes]
rs2623427	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2623430	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2623432	1.00[ASN][1000 genomes]
rs2623436	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833120	1.00[ASN][1000 genomes]
rs833122	1.00[ASN][1000 genomes]
rs833123	1.00[ASN][1000 genomes]
rs833127	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs833146	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183158800-183183200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr2:183164600-183168400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:183165200-183168000	Enhancers	Osteobl	bone
4	chr2:183166000-183167400	Enhancers	Brain Germinal Matrix	brain
5	chr2:183166000-183168400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr2:183166200-183168600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr2:183166400-183167600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:183166400-183167600	Enhancers	HSMM	muscle
9	chr2:183166400-183168200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:183166600-183168000	Enhancers	HSMMtube	muscle
11	chr2:183166600-183168000	Enhancers	NHDF-Ad	bronchial
12	chr2:183166800-183167800	Enhancers	NH-A	brain
13	chr2:183167000-183167400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: