Variant report

Variant	rs833158
Chromosome Location	chr2:183151863-183151864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1196060	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs1196063	1.00[YRI][hapmap]
rs1196064	0.87[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs1438074	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1549870	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.88[ASN][1000 genomes]
rs16822799	0.81[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs16822892	0.93[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs16822961	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.87[ASN][1000 genomes]
rs2368280	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs3769779	1.00[CEU][hapmap];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3769789	0.81[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs3769794	0.81[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs3769796	0.81[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs3769797	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs3769802	0.81[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs3769806	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs3769811	0.87[CHB][hapmap];0.97[CHD][hapmap];0.89[JPT][hapmap]
rs57936173	0.84[ASN][1000 genomes]
rs58174575	0.84[ASN][1000 genomes]
rs58256109	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58517019	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60217954	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs60701525	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6721940	1.00[YRI][hapmap]
rs6734150	0.87[CHB][hapmap];0.89[JPT][hapmap]
rs72897058	0.98[ASN][1000 genomes]
rs7588289	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs833141	1.00[ASW][hapmap];1.00[CEU][hapmap]
rs833159	1.00[CEU][hapmap]
rs833162	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583913	chr2:183043563-183243313	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1008825	chr2:183067339-183228668	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv536066	chr2:183067339-183228668	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs833158	DUSP19	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183142200-183155600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:183149000-183158200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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