Variant report

Variant	rs833806
Chromosome Location	chr6:44031083-44031084
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:43736227..43739136-chr6:44029412..44032066,3	MCF-7	breast:
2	chr6:43965829..43969030-chr6:44030391..44033569,3	K562	blood:
3	chr6:43751124..43753004-chr6:44031028..44033045,2	K562	blood:
4	chr6:43969325..43971101-chr6:44029375..44032294,2	K562	blood:
5	chr6:44030222..44032797-chr6:44035126..44037771,3	MCF-7	breast:
6	chr6:43878483..43880923-chr6:44028958..44031192,2	K562	blood:
7	chr6:44023933..44027235-chr6:44028929..44032917,4	MCF-7	breast:
8	chr6:43960480..43963348-chr6:44031057..44033743,2	K562	blood:
9	chr6:43641372..43644107-chr6:44030804..44032772,2	K562	blood:
10	chr6:43903815..43906150-chr6:44030281..44032523,2	K562	blood:
11	chr6:43739060..43742516-chr6:44030439..44033091,3	MCF-7	breast:
12	chr6:43669741..43672531-chr6:44030983..44033757,2	K562	blood:
13	chr6:43884618..43886136-chr6:44030373..44032248,2	K562	blood:
14	chr6:43918917..43921622-chr6:44030358..44031978,2	MCF-7	breast:
15	chr6:43894374..43896257-chr6:44029286..44032108,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000181577	Chromatin interaction
ENSG00000112715	Chromatin interaction
ENSG00000272114	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs833805	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44005800-44036800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:44020800-44036200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:44022400-44040400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:44024000-44033800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:44024000-44034000	Enhancers	NH-A	brain
6	chr6:44024000-44036200	Enhancers	HMEC	breast
7	chr6:44024000-44036600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:44024200-44033600	Enhancers	Fetal Muscle Leg	muscle
9	chr6:44024400-44033400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr6:44024600-44035800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:44026800-44035000	Weak transcription	Pancreas	Pancrea
12	chr6:44027000-44033000	Enhancers	HSMM	muscle
13	chr6:44027000-44034800	Weak transcription	Fetal Lung	lung
14	chr6:44027200-44031800	Weak transcription	Colonic Mucosa	Colon
15	chr6:44027400-44032400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:44027400-44032800	Weak transcription	Lung	lung
17	chr6:44027600-44032000	Enhancers	Hela-S3	cervix
18	chr6:44027600-44032200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:44027800-44031800	Weak transcription	HUVEC	blood vessel
20	chr6:44028200-44031200	Enhancers	Colon Smooth Muscle	Colon
21	chr6:44028200-44033200	Enhancers	NHEK	skin
22	chr6:44028400-44031600	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr6:44028400-44031800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:44028400-44033600	Enhancers	Fetal Heart	heart
25	chr6:44028600-44031600	Weak transcription	Placenta	Placenta
26	chr6:44028600-44033000	Enhancers	Fetal Muscle Trunk	muscle
27	chr6:44029200-44031200	Enhancers	HepG2	liver
28	chr6:44029200-44032400	Enhancers	K562	blood
29	chr6:44029600-44031600	Enhancers	Brain Anterior Caudate	brain
30	chr6:44029600-44032600	Enhancers	Esophagus	oesophagus
31	chr6:44029600-44033600	Enhancers	Left Ventricle	heart
32	chr6:44029600-44033800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:44029600-44034200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:44029800-44033200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:44029800-44033600	Enhancers	Right Ventricle	heart
36	chr6:44030000-44032000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr6:44030000-44032000	Weak transcription	Adipose Nuclei	Adipose
38	chr6:44030000-44040800	Weak transcription	Gastric	stomach
39	chr6:44030200-44032200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr6:44030200-44033800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:44030200-44036000	Enhancers	GM12878-XiMat	blood
42	chr6:44030200-44040400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr6:44030400-44031200	Enhancers	H1 Cell Line	embryonic stem cell
44	chr6:44030400-44031200	Genic enhancers	Right Atrium	heart
45	chr6:44030400-44031400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:44030400-44031400	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr6:44030400-44031400	Weak transcription	NHLF	lung
48	chr6:44030400-44031600	Weak transcription	Osteobl	bone
49	chr6:44030400-44032000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:44030400-44032600	Weak transcription	Aorta	Aorta

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