Variant report

Variant	rs833979
Chromosome Location	chr1:191741576-191741577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10753991	0.92[ASN][1000 genomes]
rs10801053	0.88[ASN][1000 genomes]
rs10920988	0.81[ASN][1000 genomes]
rs10920991	0.86[ASN][1000 genomes]
rs10920998	0.89[ASN][1000 genomes]
rs10921001	0.87[ASN][1000 genomes]
rs10921003	0.90[ASN][1000 genomes]
rs10921013	0.95[ASN][1000 genomes]
rs1106323	0.89[ASN][1000 genomes]
rs12023684	0.88[ASN][1000 genomes]
rs12026198	0.88[ASN][1000 genomes]
rs12036028	0.85[ASN][1000 genomes]
rs12117751	0.95[ASN][1000 genomes]
rs12124408	0.92[ASN][1000 genomes]
rs12129356	0.92[ASN][1000 genomes]
rs12142870	0.87[ASN][1000 genomes]
rs12404087	0.88[ASN][1000 genomes]
rs12407153	0.89[ASN][1000 genomes]
rs12564692	0.81[ASN][1000 genomes]
rs12567586	0.88[ASN][1000 genomes]
rs2210924	0.88[ASN][1000 genomes]
rs2785752	0.81[AFR][1000 genomes]
rs4142414	0.88[ASN][1000 genomes]
rs59146321	0.86[ASN][1000 genomes]
rs6656917	0.81[ASN][1000 genomes]
rs6664040	0.89[ASN][1000 genomes]
rs6666566	0.87[ASN][1000 genomes]
rs6698794	0.90[ASN][1000 genomes]
rs7554086	0.94[ASN][1000 genomes]
rs833975	0.84[AFR][1000 genomes]
rs946827	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872795	chr1:191136824-191919402	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1003422	chr1:191300069-191919379	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv535250	chr1:191300069-191919379	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv872804	chr1:191406367-191804265	Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv872808	chr1:191462474-191804265	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv872810	chr1:191558101-191916122	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1007060	chr1:191577303-192141825	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv872818	chr1:191615655-191809160	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv548592	chr1:191623693-191936556	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv548593	chr1:191624744-191936556	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv999147	chr1:191633993-191944853	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	nsv872820	chr1:191638233-191798964	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv428279	chr1:191689246-192014612	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv1012281	chr1:191694764-191827613	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv1000408	chr1:191722163-191858685	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
16	nsv1002817	chr1:191723748-191756690	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:191739800-191741800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:191740000-191741600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:191740200-191741600	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:191740200-191741600	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:191740400-191741600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:191741200-191742400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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