Variant report

Variant	rs834187
Chromosome Location	chr3:43084953-43084954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs483765	0.87[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs513065	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs609725	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs834585	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43079000-43085400	Weak transcription	Fetal Muscle Leg	muscle
2	chr3:43080200-43091000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr3:43083400-43085800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:43084200-43085000	Genic enhancers	Ovary	ovary
5	chr3:43084200-43087600	Enhancers	Liver	Liver
6	chr3:43084400-43085000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr3:43084400-43085000	Genic enhancers	Fetal Stomach	stomach
8	chr3:43084400-43085000	Enhancers	Right Atrium	heart
9	chr3:43084400-43086400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:43084600-43085000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:43084600-43085000	Enhancers	Brain Angular Gyrus	brain
12	chr3:43084600-43086000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:43084600-43086400	Enhancers	Fetal Brain Male	brain
14	chr3:43084800-43085000	Enhancers	Esophagus	oesophagus
15	chr3:43084800-43085200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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