Variant report

Variant	rs834576
Chromosome Location	chr6:44205779-44205780
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:44123357..44125146-chr6:44203946..44206894,2	K562	blood:
2	chr6:43772379..43773030-chr6:44205542..44206258,2	MCF-7	breast:
3	chr6:44205429..44206336-chr6:44213621..44215036,3	K562	blood:
4	chr6:44140149..44141154-chr6:44205370..44206308,6	MCF-7	breast:
5	chr6:43737632..43739680-chr6:44205540..44207219,3	MCF-7	breast:
6	chr6:44139023..44142178-chr6:44202710..44207835,5	K562	blood:
7	chr6:44077806..44078726-chr6:44204971..44206412,5	MCF-7	breast:
8	chr6:44067509..44068101-chr6:44205599..44206209,2	MCF-7	breast:
9	chr6:44077806..44078726-chr6:44204971..44206412,4	MCF-7	breast:
10	chr6:44064502..44065068-chr6:44205526..44206089,2	MCF-7	breast:
11	chr6:44079762..44081284-chr6:44204790..44206941,2	K562	blood:
12	chr6:44140078..44141155-chr6:44205142..44206527,19	K562	blood:
13	chr6:44120961..44123352-chr6:44203847..44206405,2	MCF-7	breast:
14	chr6:44199025..44201599-chr6:44203689..44206993,5	MCF-7	breast:
15	chr6:44064123..44065127-chr6:44205409..44206132,3	K562	blood:
16	chr6:44194591..44197466-chr6:44204314..44205838,2	MCF-7	breast:
17	chr6:44094095..44096990-chr6:44204419..44207697,4	MCF-7	breast:
18	chr6:44052482..44055153-chr6:44202831..44205817,2	K562	blood:
19	chr6:44093264..44095446-chr6:44204345..44207044,2	K562	blood:
20	chr6:44191141..44192105-chr6:44205563..44206387,6	MCF-7	breast:
21	chr6:44188998..44189909-chr6:44204941..44206651,4	K562	blood:
22	chr6:44064308..44065554-chr6:44205339..44206301,3	MCF-7	breast:
23	chr6:44191184..44192024-chr6:44205755..44206387,3	MCF-7	breast:
24	chr6:44051124..44053637-chr6:44204273..44206013,2	MCF-7	breast:
25	chr3:139276752..139277509-chr6:44205350..44205852,2	MCF-7	breast:
26	chr6:44184911..44192138-chr6:44201380..44207306,8	MCF-7	breast:
27	chr6:44118511..44121325-chr6:44203702..44206845,3	K562	blood:
28	chr6:44140545..44141089-chr6:44205316..44206164,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC29A1-2	chr6:44204713-44208319	NONHSAT112955

No data

Variant related genes	Relation type
ENSG00000112715	Chromatin interaction
ENSG00000112759	Chromatin interaction
ENSG00000137216	Chromatin interaction
ENSG00000272114	Chromatin interaction
ENSG00000096384	Chromatin interaction
ENSG00000180992	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs324151	0.82[ASN][1000 genomes]
rs73733886	0.80[ASN][1000 genomes]
rs7738226	1.00[ASN][1000 genomes]
rs7748377	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases
2	nsv885851	chr6:44178471-44240559	Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv885852	chr6:44185901-44222718	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
4	nsv603003	chr6:44191920-44253765	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
5	nsv462936	chr6:44191920-44282316	Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
6	nsv603004	chr6:44191920-44282316	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
7	nsv885853	chr6:44197181-44274797	Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
8	nsv524398	chr6:44200953-44253765	Active TSS Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44204600-44207400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:44204800-44205800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:44204800-44205800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:44204800-44206000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr6:44204800-44206200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:44204800-44206200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:44204800-44206200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:44204800-44206200	Flanking Active TSS	Osteobl	bone
9	chr6:44205000-44205800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
10	chr6:44205000-44206000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
11	chr6:44205000-44206000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr6:44205000-44206000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:44205000-44206000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:44205000-44206000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:44205000-44206000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:44205000-44206000	Flanking Active TSS	Colonic Mucosa	Colon
17	chr6:44205000-44206000	Flanking Active TSS	Fetal Intestine Small	intestine
18	chr6:44205000-44206000	Flanking Active TSS	Fetal Muscle Leg	muscle
19	chr6:44205000-44206000	Flanking Active TSS	HMEC	breast
20	chr6:44205000-44206200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
21	chr6:44205000-44206200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
22	chr6:44205000-44206200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr6:44205000-44206200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:44205000-44206200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:44205000-44206200	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr6:44205000-44206200	Flanking Active TSS	Brain Cingulate Gyrus	brain
27	chr6:44205000-44206200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr6:44205000-44206200	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr6:44205000-44206200	Flanking Active TSS	GM12878-XiMat	blood
30	chr6:44205000-44206400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr6:44205000-44206400	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr6:44205200-44205800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr6:44205200-44205800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
34	chr6:44205200-44205800	Flanking Active TSS	Primary B cells from cord blood	blood
35	chr6:44205200-44205800	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr6:44205200-44205800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr6:44205200-44205800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:44205200-44205800	Flanking Active TSS	Fetal Heart	heart
39	chr6:44205200-44205800	Flanking Active TSS	Fetal Thymus	thymus
40	chr6:44205200-44205800	Transcr. at gene 5' and 3'	Right Atrium	heart
41	chr6:44205200-44205800	Active TSS	Thymus	Thymus
42	chr6:44205200-44206000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:44205200-44206000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr6:44205200-44206000	Active TSS	iPS-18 Cell Line	embryonic stem cell
45	chr6:44205200-44206000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr6:44205200-44206000	Flanking Active TSS	Primary B cells from peripheral blood	blood
47	chr6:44205200-44206000	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr6:44205200-44206000	Active TSS	Colon Smooth Muscle	Colon
49	chr6:44205200-44206000	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr6:44205200-44206000	Flanking Active TSS	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links