Variant report

Variant	rs835226
Chromosome Location	chr12:105064140-105064141
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105047695..105049716-chr12:105062414..105064502,2	MCF-7	breast:
2	chr12:105054843..105056808-chr12:105063463..105065302,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs703664	0.85[CEU][hapmap]
rs703667	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1050695	chr12:105000981-105125161	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv541589	chr12:105000981-105125161	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3439380	chr12:105062222-105066520	Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs835226	SCYL2	cis	cerebellum	SCAN

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105051000-105065000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr12:105051800-105065000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:105060200-105068400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr12:105060400-105066800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr12:105060400-105067000	Enhancers	Pancreas	Pancrea
6	chr12:105060600-105064400	Enhancers	A549	lung
7	chr12:105060600-105064600	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:105060600-105066200	Enhancers	Fetal Lung	lung
9	chr12:105060600-105066600	Enhancers	Brain Cingulate Gyrus	brain
10	chr12:105060800-105065800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:105060800-105067800	Enhancers	Placenta	Placenta
12	chr12:105061000-105067800	Enhancers	Gastric	stomach
13	chr12:105061000-105068000	Enhancers	Fetal Muscle Leg	muscle
14	chr12:105061000-105068200	Enhancers	Fetal Stomach	stomach
15	chr12:105061200-105066200	Enhancers	Duodenum Mucosa	Duodenum
16	chr12:105061200-105067200	Enhancers	Adipose Nuclei	Adipose
17	chr12:105061200-105067200	Enhancers	Left Ventricle	heart
18	chr12:105061200-105067800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr12:105061200-105068200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr12:105061400-105064200	Bivalent Enhancer	Stomach Mucosa	stomach
21	chr12:105061400-105065600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:105061400-105066200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr12:105061400-105067200	Enhancers	Brain Angular Gyrus	brain
24	chr12:105061600-105066000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr12:105061600-105066200	Enhancers	Fetal Brain Male	brain
26	chr12:105061800-105066000	Enhancers	HSMMtube	muscle
27	chr12:105061800-105066800	Enhancers	Primary hematopoietic stem cells	blood
28	chr12:105062000-105064400	Enhancers	Fetal Muscle Trunk	muscle
29	chr12:105062000-105064400	Enhancers	Ovary	ovary
30	chr12:105062000-105065000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr12:105062000-105065800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr12:105062000-105066200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr12:105062000-105066600	Enhancers	Primary B cells from peripheral blood	blood
34	chr12:105062000-105066800	Enhancers	ES-I3 Cell Line	embryonic stem cell
35	chr12:105062000-105066800	Enhancers	Lung	lung
36	chr12:105062000-105067000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr12:105062000-105068000	Enhancers	NHLF	lung
38	chr12:105062000-105068400	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr12:105062200-105064200	Enhancers	Fetal Kidney	kidney
40	chr12:105062200-105064800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr12:105062200-105065400	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr12:105062200-105065600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr12:105062200-105065800	Enhancers	NHDF-Ad	bronchial
44	chr12:105062200-105066000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr12:105062200-105066000	Enhancers	Fetal Thymus	thymus
46	chr12:105062200-105066200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:105062200-105066200	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr12:105062200-105066600	Enhancers	Spleen	Spleen
49	chr12:105062200-105066600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
50	chr12:105062200-105067600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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