Variant report

Variant	rs836635
Chromosome Location	chr2:173558506-173558507
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:173558154..173560301-chr2:173561566..173564675,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs836604	1.00[AMR][1000 genomes]
rs836640	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533927	chr2:173161637-173796894	Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	esv2760591	chr2:173396905-173719520	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv583665	chr2:173460640-173643087	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv274888	chr2:173550156-173559068	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173556600-173559000	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr2:173556800-173559400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:173556800-173564600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:173557200-173559000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:173557200-173559000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr2:173557200-173559000	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr2:173557200-173559000	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr2:173557200-173559000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:173557200-173559000	Enhancers	HMEC	breast
10	chr2:173557200-173559200	Enhancers	Fetal Heart	heart
11	chr2:173557200-173559400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr2:173557200-173559400	Enhancers	NHDF-Ad	bronchial
13	chr2:173557200-173559400	Enhancers	NHLF	lung
14	chr2:173557400-173558600	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr2:173557400-173558800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr2:173557400-173558800	Enhancers	Esophagus	oesophagus
17	chr2:173557400-173558800	Enhancers	Rectal Smooth Muscle	rectum
18	chr2:173557400-173558800	Enhancers	HUVEC	blood vessel
19	chr2:173557400-173558800	Enhancers	NH-A	brain
20	chr2:173557400-173559000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr2:173557400-173559000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:173557400-173559000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr2:173557400-173559000	Enhancers	Left Ventricle	heart
24	chr2:173557400-173559000	Enhancers	Right Atrium	heart
25	chr2:173557400-173559000	Enhancers	HSMM	muscle
26	chr2:173557400-173559000	Enhancers	Osteobl	bone
27	chr2:173557400-173559400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:173557400-173559600	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr2:173557600-173558600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr2:173557600-173558600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr2:173557600-173558600	Enhancers	Stomach Mucosa	stomach
32	chr2:173557600-173558600	Flanking Active TSS	A549	lung
33	chr2:173557600-173558600	Flanking Active TSS	Hela-S3	cervix
34	chr2:173557600-173558600	Enhancers	HSMMtube	muscle
35	chr2:173557600-173559000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr2:173557800-173558600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr2:173557800-173558600	Enhancers	Fetal Thymus	thymus
38	chr2:173557800-173558800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:173557800-173558800	Enhancers	Placenta	Placenta
40	chr2:173557800-173559000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr2:173557800-173559000	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr2:173557800-173559000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
43	chr2:173558000-173558800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr2:173558000-173559000	Flanking Active TSS	Primary T cells from cord blood	blood
45	chr2:173558200-173558600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr2:173558200-173558600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
47	chr2:173558200-173558600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr2:173558200-173558600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr2:173558200-173558800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr2:173558200-173558800	Enhancers	Right Ventricle	heart

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