Variant report

Variant	rs837103
Chromosome Location	chr5:40772071-40772072
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40768014..40769850-chr5:40771967..40773630,2	K562	blood:
2	chr5:40771614..40774420-chr5:40796699..40798889,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000132356	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1631660	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs1644988	0.88[ASN][1000 genomes]
rs837115	0.94[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881377	chr5:40753877-40810426	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv881070	chr5:40753877-40827307	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40756000-40776000	Weak transcription	Aorta	Aorta
2	chr5:40756000-40780600	Weak transcription	Spleen	Spleen
3	chr5:40756200-40775200	Weak transcription	Stomach Mucosa	stomach
4	chr5:40756200-40797200	Weak transcription	Gastric	stomach
5	chr5:40756400-40773800	Weak transcription	Lung	lung
6	chr5:40756400-40775000	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:40756400-40776200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr5:40756400-40776400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:40756400-40776800	Weak transcription	Psoas Muscle	Psoas
10	chr5:40756400-40780600	Weak transcription	Esophagus	oesophagus
11	chr5:40756400-40785200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr5:40756400-40797400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr5:40756600-40775800	Weak transcription	Fetal Heart	heart
14	chr5:40756600-40776000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr5:40756600-40780600	Weak transcription	Pancreas	Pancrea
16	chr5:40756600-40781200	Weak transcription	Fetal Brain Male	brain
17	chr5:40757200-40777200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr5:40757600-40773600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:40758200-40777000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:40758400-40777800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:40759000-40776200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr5:40759400-40777000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr5:40759400-40777200	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:40759600-40776000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr5:40759800-40776000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr5:40760000-40777600	Strong transcription	HUES64 Cell Line	embryonic stem cell
27	chr5:40760400-40776200	Strong transcription	Osteobl	bone
28	chr5:40760600-40776000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr5:40760600-40777600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr5:40760800-40777600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:40761000-40775600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr5:40761200-40776000	Strong transcription	Liver	Liver
33	chr5:40761400-40776000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr5:40761400-40777600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:40761600-40777600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:40761800-40775200	Strong transcription	Fetal Intestine Large	intestine
37	chr5:40762000-40777800	Strong transcription	Primary B cells from peripheral blood	blood
38	chr5:40762000-40778400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:40763200-40777200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr5:40763400-40776000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr5:40763600-40777600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr5:40765200-40772200	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:40765200-40775400	Weak transcription	Brain Angular Gyrus	brain
44	chr5:40765200-40775800	Weak transcription	Brain Hippocampus Middle	brain
45	chr5:40765400-40775200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr5:40765400-40776000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr5:40765400-40776000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr5:40765400-40778200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr5:40765400-40796600	Weak transcription	Right Ventricle	heart
50	chr5:40765600-40776000	Weak transcription	Thymus	Thymus

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