Variant report

Variant	rs841068
Chromosome Location	chr12:44678267-44678268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10506246	0.88[CEU][hapmap]
rs10736020	0.85[CHB][hapmap]
rs1098498	0.88[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1527318	0.89[CEU][hapmap]
rs1527319	0.81[CEU][hapmap]
rs1726886	0.93[CEU][hapmap];0.85[CHB][hapmap]
rs1798021	0.88[CEU][hapmap]
rs2220726	0.89[CEU][hapmap]
rs2897810	0.82[CEU][hapmap]
rs7300557	0.85[CHB][hapmap]
rs7307771	0.89[CEU][hapmap]
rs7957859	0.92[CEU][hapmap];0.85[JPT][hapmap]
rs840771	0.88[CEU][hapmap]
rs9738577	0.88[CEU][hapmap]
rs9739776	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832393	chr12:44529406-44692414	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv686	chr12:44671240-44696910	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44654200-44679400	Weak transcription	Pancreas	Pancrea
2	chr12:44672800-44680600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:44676600-44680400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr12:44676600-44697800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:44676800-44679200	Weak transcription	Gastric	stomach
6	chr12:44678000-44680600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links