Variant report

Variant	rs841699
Chromosome Location	chr1:95019905-95019906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95004121..95007110-chr1:95017554..95021316,3	MCF-7	breast:
2	chr1:95005939..95010305-chr1:95012395..95021281,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000117525	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11799679	1.00[AMR][1000 genomes]
rs11809823	1.00[AMR][1000 genomes]
rs12562602	1.00[MEX][hapmap]
rs3917637	1.00[AMR][1000 genomes]
rs6689929	1.00[AMR][1000 genomes]
rs6701812	1.00[AMR][1000 genomes]
rs698942	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs698946	1.00[ASW][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs863988	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv870696	chr1:95005220-95081587	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv871391	chr1:95005220-95083836	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95011600-95025400	Weak transcription	NHLF	lung
2	chr1:95013600-95022000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:95014600-95022400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:95014800-95022000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr1:95014800-95022200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:95014800-95022200	Enhancers	HMEC	breast
7	chr1:95015600-95020400	Enhancers	Fetal Intestine Small	intestine
8	chr1:95015600-95022200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:95015800-95021000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr1:95016000-95020400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:95016200-95021000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:95016600-95020800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:95016600-95025000	Weak transcription	Right Atrium	heart
14	chr1:95016800-95021600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr1:95017000-95020600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:95017000-95020800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:95017200-95020000	Enhancers	Ovary	ovary
18	chr1:95017200-95021200	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:95017400-95020400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr1:95017400-95020600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:95017400-95020600	Enhancers	Fetal Stomach	stomach
22	chr1:95017600-95020000	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr1:95017600-95020400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:95017600-95020600	Enhancers	H1 Cell Line	embryonic stem cell
25	chr1:95017600-95020600	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:95017600-95020800	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr1:95017600-95021000	Enhancers	H9 Cell Line	embryonic stem cell
28	chr1:95017600-95021800	Enhancers	Placenta Amnion	Placenta Amnion
29	chr1:95017800-95020600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:95017800-95020600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr1:95017800-95020800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr1:95017800-95021000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr1:95018000-95020000	Weak transcription	Fetal Kidney	kidney
34	chr1:95018200-95020800	Enhancers	HepG2	liver
35	chr1:95018200-95021000	Weak transcription	Placenta	Placenta
36	chr1:95018600-95020000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:95018800-95020600	Enhancers	Fetal Muscle Leg	muscle
38	chr1:95018800-95020800	Enhancers	HSMMtube	muscle
39	chr1:95018800-95021200	Enhancers	Fetal Muscle Trunk	muscle
40	chr1:95019000-95020200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr1:95019000-95020400	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr1:95019000-95020600	Enhancers	HSMM	muscle
43	chr1:95019000-95028200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
44	chr1:95019000-95028200	Weak transcription	Pancreas	Pancrea
45	chr1:95019200-95020600	Enhancers	Muscle Satellite Cultured Cells	--
46	chr1:95019200-95020800	Weak transcription	Esophagus	oesophagus
47	chr1:95019200-95021200	Enhancers	NHEK	skin
48	chr1:95019200-95025400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:95019200-95025400	Weak transcription	Stomach Mucosa	stomach
50	chr1:95019400-95021000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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