Variant report

Variant	rs841921
Chromosome Location	chr5:101630930-101630931
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10051525	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10057529	0.91[ASN][1000 genomes]
rs10057599	0.91[ASN][1000 genomes]
rs10069466	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10073052	0.91[ASN][1000 genomes]
rs10479191	0.91[ASN][1000 genomes]
rs1078338	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1117130	0.81[ASN][1000 genomes]
rs1452057	0.81[ASN][1000 genomes]
rs1452059	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1452060	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1452065	0.86[ASN][1000 genomes]
rs1823694	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2004550	0.91[ASN][1000 genomes]
rs2004551	0.91[ASN][1000 genomes]
rs2010590	0.91[ASN][1000 genomes]
rs2060836	0.81[ASN][1000 genomes]
rs2060837	0.81[ASN][1000 genomes]
rs2167586	0.81[ASN][1000 genomes]
rs2548725	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2600826	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2600831	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28532891	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2895806	0.91[ASN][1000 genomes]
rs3096214	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3114660	0.91[ASN][1000 genomes]
rs3114661	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3114665	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs384615	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs386464	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs404598	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs416332	0.80[EUR][1000 genomes]
rs4343814	0.91[ASN][1000 genomes]
rs56358831	0.81[ASN][1000 genomes]
rs56881277	0.91[ASN][1000 genomes]
rs62372208	0.91[ASN][1000 genomes]
rs62372209	0.91[ASN][1000 genomes]
rs62372210	0.91[ASN][1000 genomes]
rs6860720	0.81[ASN][1000 genomes]
rs6878190	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6878326	0.81[ASN][1000 genomes]
rs6881331	0.91[ASN][1000 genomes]
rs6882313	0.91[ASN][1000 genomes]
rs6884162	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6893391	0.81[ASN][1000 genomes]
rs6893723	0.81[ASN][1000 genomes]
rs6895407	0.91[ASN][1000 genomes]
rs709369	0.89[ASN][1000 genomes]
rs709371	0.91[ASN][1000 genomes]
rs709372	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7701832	0.91[ASN][1000 genomes]
rs7702418	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7721548	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7722680	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7734926	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs841923	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs841924	0.90[ASN][1000 genomes]
rs841925	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs841927	0.91[ASN][1000 genomes]
rs841928	0.91[ASN][1000 genomes]
rs841929	0.91[ASN][1000 genomes]
rs841930	0.91[ASN][1000 genomes]
rs841931	0.91[ASN][1000 genomes]
rs841933	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs896544	0.91[ASN][1000 genomes]
rs896545	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022551	chr5:101366177-101649643	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv882505	chr5:101397849-101652251	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028787	chr5:101432086-101718569	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv817537	chr5:101489151-101992104	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1016176	chr5:101534391-102333606	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv537831	chr5:101534391-102333606	Genic enhancers Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv522882	chr5:101596633-101782930	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1029894	chr5:101620079-102516827	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:101624400-101631400	Weak transcription	Pancreas	Pancrea
2	chr5:101629200-101631000	Weak transcription	Primary T helper cells PMA-I stimulated	--
3	chr5:101629400-101631000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:101629800-101631400	Active TSS	Lung	lung
5	chr5:101630000-101631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:101630200-101631000	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
7	chr5:101630200-101632000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:101630200-101632400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
9	chr5:101630400-101631000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr5:101630400-101631000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
11	chr5:101630400-101631200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr5:101630400-101631200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr5:101630400-101631400	Enhancers	Primary B cells from peripheral blood	blood
14	chr5:101630400-101631400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr5:101630400-101632600	Active TSS	Fetal Intestine Large	intestine
16	chr5:101630400-101632800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:101630400-101632800	Active TSS	Fetal Intestine Small	intestine
18	chr5:101630600-101631000	Flanking Active TSS	H9 Cell Line	embryonic stem cell
19	chr5:101630600-101631000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
20	chr5:101630600-101631000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr5:101630600-101631000	Flanking Active TSS	Duodenum Mucosa	Duodenum
22	chr5:101630600-101631200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:101630600-101631200	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr5:101630600-101631200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr5:101630600-101631200	Enhancers	Liver	Liver
26	chr5:101630600-101631400	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr5:101630600-101631400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr5:101630600-101631400	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr5:101630600-101631400	Active TSS	Fetal Brain Female	brain
30	chr5:101630600-101631400	Enhancers	Spleen	Spleen
31	chr5:101630600-101632000	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr5:101630600-101632400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr5:101630600-101632400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
34	chr5:101630600-101632600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr5:101630600-101632600	Active TSS	Fetal Kidney	kidney
36	chr5:101630800-101631000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
37	chr5:101630800-101631000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr5:101630800-101631000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr5:101630800-101631000	Active TSS	Primary T cells fromperipheralblood	blood
40	chr5:101630800-101631000	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr5:101630800-101631000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr5:101630800-101631000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:101630800-101631000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr5:101630800-101631000	Flanking Active TSS	Brain Hippocampus Middle	brain
45	chr5:101630800-101631000	Active TSS	Thymus	Thymus
46	chr5:101630800-101631000	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
47	chr5:101630800-101631200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:101630800-101631200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
49	chr5:101630800-101631200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
50	chr5:101630800-101631200	Enhancers	Colon Smooth Muscle	Colon

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