Variant report

Variant	rs842207
Chromosome Location	chr12:44465270-44465271
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10506234	0.86[CHB][hapmap]
rs11182381	1.00[JPT][hapmap]
rs11182390	1.00[JPT][hapmap]
rs11182413	1.00[JPT][hapmap]
rs11613902	0.86[CHB][hapmap]
rs1168080	0.83[EUR][1000 genomes]
rs12315961	0.86[CHB][hapmap]
rs1352935	0.86[CHB][hapmap]
rs17094063	0.86[CHB][hapmap]
rs17094102	0.86[CHB][hapmap]
rs17094110	0.86[CHB][hapmap]
rs17094117	0.86[CHB][hapmap]
rs17094119	0.86[CHB][hapmap]
rs6582498	0.86[CHB][hapmap]
rs7298835	0.86[CHB][hapmap]
rs7953173	0.86[CHB][hapmap]
rs7967957	0.86[CHB][hapmap]
rs7971340	0.85[CHB][hapmap]
rs7980383	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832390	chr12:44318071-44512114	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1041188	chr12:44331098-44528712	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv832391	chr12:44394137-44552555	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44454000-44470400	Weak transcription	Fetal Brain Female	brain
2	chr12:44457000-44470600	Weak transcription	Psoas Muscle	Psoas
3	chr12:44458200-44466000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:44458400-44482200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr12:44460000-44470600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr12:44463400-44470600	Weak transcription	Aorta	Aorta
7	chr12:44464200-44473600	Weak transcription	Fetal Intestine Small	intestine
8	chr12:44464800-44465400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr12:44464800-44465800	Enhancers	Fetal Brain Male	brain
10	chr12:44464800-44468400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr12:44465200-44469600	Weak transcription	Esophagus	oesophagus
12	chr12:44465200-44470600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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