Variant report

Variant	rs843404
Chromosome Location	chr2:116118089-116118090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1712010	0.94[AFR][1000 genomes]
rs58005171	0.84[AFR][1000 genomes]
rs843401	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834339	chr2:115953298-116132979	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv874918	chr2:116098665-116183946	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
3	nsv963924	chr2:116110836-116134022	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:116115600-116118400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:116115600-116118600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:116115600-116120200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr2:116115600-116120600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:116116800-116120400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:116116800-116121000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr2:116116800-116121200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:116117000-116118400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:116117600-116118200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:116117600-116118600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr2:116117800-116118400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:116118000-116118800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:116118000-116121800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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