Variant report

Variant	rs843577
Chromosome Location	chr4:121645546-121645547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10518377	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1099237	0.89[AFR][1000 genomes]
rs1099238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1390563	0.94[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs1397776	0.86[AFR][1000 genomes]
rs1849077	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6534205	0.94[ASW][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs7657769	0.81[CHD][hapmap]
rs843553	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs843554	1.00[ASW][hapmap];0.91[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs843565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843568	0.89[YRI][hapmap];0.90[AFR][1000 genomes]
rs843570	0.89[ASW][hapmap];0.89[CEU][hapmap];0.90[CHB][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.93[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs843571	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843572	0.85[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs843574	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879852	chr4:121108734-121768496	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1004485	chr4:121542992-121716769	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv916737	chr4:121589793-121748847	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv461634	chr4:121623057-121765527	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv595334	chr4:121623057-121765527	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121620800-121654400	Weak transcription	Left Ventricle	heart
2	chr4:121620800-121671400	Weak transcription	Pancreas	Pancrea
3	chr4:121625600-121657600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr4:121626000-121658200	Weak transcription	Aorta	Aorta
5	chr4:121630000-121671400	Weak transcription	Ovary	ovary
6	chr4:121640600-121646600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr4:121641200-121670400	Weak transcription	Fetal Muscle Leg	muscle
8	chr4:121641400-121645600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:121641400-121669600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:121641600-121647000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:121641600-121652800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:121641800-121647200	Weak transcription	Fetal Thymus	thymus
13	chr4:121642800-121670600	Weak transcription	Fetal Stomach	stomach
14	chr4:121643000-121646800	Weak transcription	Fetal Lung	lung
15	chr4:121644000-121647000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr4:121644200-121658200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:121644400-121646600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:121644400-121653000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr4:121644400-121654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:121644600-121645600	Weak transcription	Fetal Heart	heart
21	chr4:121644600-121646600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr4:121645200-121645600	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr4:121645200-121645600	Enhancers	Hela-S3	cervix
24	chr4:121645200-121647000	Enhancers	Pancreatic Islets	Pancreatic Islet

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