Variant report

Variant	rs843988
Chromosome Location	chr1:58918019-58918020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs338236	1.00[AMR][1000 genomes]
rs338242	1.00[AMR][1000 genomes]
rs338249	1.00[AMR][1000 genomes]
rs706460	1.00[AMR][1000 genomes]
rs849588	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008968	chr1:58582159-58982440	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv534974	chr1:58582159-58982440	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv829948	chr1:58803681-58971380	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv546314	chr1:58915624-58936384	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58887200-58919200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr1:58893400-58929200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr1:58898800-58929000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr1:58899000-58934200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr1:58906200-58932000	Weak transcription	Ovary	ovary
6	chr1:58911200-58920000	Weak transcription	Lung	lung
7	chr1:58913400-58919600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:58913800-58919600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:58914000-58930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:58914400-58919000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:58915000-58920800	Weak transcription	Primary T cells from cord blood	blood
12	chr1:58915400-58922600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:58917800-58918200	Enhancers	HepG2	liver
14	chr1:58918000-58919400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:58918000-58920000	Enhancers	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links