Variant report

Variant	rs844877
Chromosome Location	chr20:23102258-23102259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:23099688..23102683-chr20:23112408..23115476,3	K562	blood:
2	chr20:23099426..23103463-chr20:23105068..23107847,3	K562	blood:
3	chr20:23095163..23098462-chr20:23100135..23102327,3	K562	blood:
4	chr20:23102012..23106528-chr20:23108448..23111067,5	K562	blood:

Variant related genes	Relation type
ENSG00000233746	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1338945	0.83[AFR][1000 genomes]
rs17756373	0.92[EUR][1000 genomes]
rs34151880	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34290000	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4446126	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6036310	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6076025	0.92[EUR][1000 genomes]
rs6076026	0.92[EUR][1000 genomes]
rs6076027	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6083006	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs699794	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs699795	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844846	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs844850	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs844851	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844852	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844853	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844854	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844855	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844856	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844857	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844860	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844861	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844862	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844863	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs844864	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844865	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs844866	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs844874	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758516	chr20:23029404-23173240	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	esv2758789	chr20:23029404-23179604	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv3402233	chr20:23101352-23105550	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3406606	chr20:23102177-23104925	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23085800-23114600	Enhancers	Placenta	Placenta
2	chr20:23093000-23103200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr20:23096000-23102600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr20:23097600-23110200	Weak transcription	Pancreas	Pancrea
5	chr20:23098000-23106000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr20:23099600-23104600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr20:23099800-23105400	Weak transcription	Gastric	stomach
8	chr20:23100000-23103200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:23100000-23104000	Weak transcription	GM12878-XiMat	blood
10	chr20:23100200-23102800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr20:23100200-23103400	Weak transcription	Primary B cells from cord blood	blood
12	chr20:23100200-23111200	Enhancers	Fetal Thymus	thymus
13	chr20:23100400-23103200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr20:23100400-23106000	Weak transcription	Colonic Mucosa	Colon
15	chr20:23100600-23103200	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr20:23100600-23103200	Flanking Active TSS	Dnd41	blood
17	chr20:23101000-23104400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr20:23101000-23104600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr20:23101200-23105400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr20:23101200-23106600	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr20:23101200-23109400	Weak transcription	Liver	Liver
22	chr20:23101400-23103200	Enhancers	K562	blood
23	chr20:23101400-23105800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr20:23101400-23106000	Weak transcription	Adipose Nuclei	Adipose
25	chr20:23101600-23102400	Enhancers	Thymus	Thymus
26	chr20:23101600-23103200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr20:23101600-23103200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr20:23101600-23104600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr20:23101800-23106000	Weak transcription	Left Ventricle	heart
30	chr20:23101800-23109200	Weak transcription	Right Ventricle	heart
31	chr20:23102000-23104600	Weak transcription	Esophagus	oesophagus
32	chr20:23102000-23105800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr20:23102000-23105800	Weak transcription	Lung	lung
34	chr20:23102000-23106200	Weak transcription	Right Atrium	heart
35	chr20:23102000-23106600	Weak transcription	Spleen	Spleen
36	chr20:23102000-23114000	Weak transcription	Rectal Mucosa Donor 31	rectum

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