Variant report

Variant	rs846757
Chromosome Location	chr9:102885146-102885147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102883493..102886275-chr9:102887503..102889136,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10156395	0.82[AMR][1000 genomes]
rs4743378	0.86[AMR][1000 genomes]
rs7045612	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv1048674	chr9:102752236-103038259	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1052007	chr9:102766948-103033937	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102862200-102902400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:102862800-102887400	Weak transcription	Pancreas	Pancrea
3	chr9:102867000-102899800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr9:102868600-102895600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:102869000-102886600	Weak transcription	K562	blood
6	chr9:102869000-102888600	Weak transcription	Hela-S3	cervix
7	chr9:102869200-102889800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr9:102869200-102901800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:102869400-102899000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:102869800-102895600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr9:102869800-102896400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr9:102870000-102887200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:102870000-102892200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr9:102870000-102895800	Weak transcription	Thymus	Thymus
15	chr9:102870000-102902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:102870200-102891000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:102870600-102888600	Weak transcription	Fetal Thymus	thymus
18	chr9:102871000-102890200	Weak transcription	HUVEC	blood vessel
19	chr9:102871200-102890600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr9:102871200-102897400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:102871400-102890200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr9:102872000-102896600	Weak transcription	Placenta	Placenta
23	chr9:102872800-102895000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr9:102873800-102888400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:102873800-102895800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr9:102873800-102900200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr9:102874000-102888600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:102874000-102896000	Weak transcription	Colon Smooth Muscle	Colon
29	chr9:102874000-102896000	Weak transcription	Lung	lung
30	chr9:102874200-102885400	Weak transcription	NHDF-Ad	bronchial
31	chr9:102874200-102887200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:102874200-102890200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr9:102874200-102890600	Weak transcription	Stomach Smooth Muscle	stomach
34	chr9:102874200-102892200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:102874200-102895600	Weak transcription	Brain Anterior Caudate	brain
36	chr9:102874200-102895800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:102874200-102896000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:102874200-102896200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:102874200-102896400	Weak transcription	Brain Hippocampus Middle	brain
40	chr9:102874200-102897600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr9:102874200-102898800	Weak transcription	Fetal Brain Male	brain
42	chr9:102874200-102902600	Weak transcription	HMEC	breast
43	chr9:102874200-102902600	Weak transcription	NHEK	skin
44	chr9:102874200-102912600	Weak transcription	Osteobl	bone
45	chr9:102874200-102937600	Weak transcription	Aorta	Aorta
46	chr9:102874400-102894200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr9:102874400-102896400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:102874600-102897800	Weak transcription	Brain Germinal Matrix	brain
49	chr9:102874800-102889000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr9:102875000-102890600	Weak transcription	Brain Substantia Nigra	brain

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