Variant report

Variant	rs846782
Chromosome Location	chr6:101281197-101281198
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1069049	0.95[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1099911	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11155720	0.80[EUR][1000 genomes]
rs12174782	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs12530388	0.82[ASN][1000 genomes]
rs1754397	0.83[EUR][1000 genomes]
rs1754398	0.83[EUR][1000 genomes]
rs1765058	0.84[EUR][1000 genomes]
rs2771419	0.83[EUR][1000 genomes]
rs34445308	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4270794	0.84[EUR][1000 genomes]
rs4454144	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4840159	0.83[JPT][hapmap]
rs592436	0.95[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs593129	0.83[EUR][1000 genomes]
rs618919	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs622353	0.81[EUR][1000 genomes]
rs638823	0.84[EUR][1000 genomes]
rs638884	0.82[EUR][1000 genomes]
rs6570972	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6570975	0.84[EUR][1000 genomes]
rs6570976	0.84[EUR][1000 genomes]
rs657915	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs661142	0.83[EUR][1000 genomes]
rs664245	0.93[JPT][hapmap]
rs669716	0.82[EUR][1000 genomes]
rs6919745	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs6931410	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6934256	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs705589	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs705591	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs705592	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs705593	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs705596	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs705599	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs705600	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs705603	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs705604	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs705605	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs705606	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs705607	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs705608	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs705610	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs705623	0.84[EUR][1000 genomes]
rs7738575	0.83[EUR][1000 genomes]
rs7739574	0.91[CEU][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs7750098	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7750122	0.84[EUR][1000 genomes]
rs7763793	0.83[EUR][1000 genomes]
rs7771570	0.83[JPT][hapmap]
rs817675	0.83[EUR][1000 genomes]
rs846771	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846772	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846773	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846775	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846777	0.90[EUR][1000 genomes]
rs846781	0.90[CEU][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs846785	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs846794	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs846797	1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs846798	0.91[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs863658	0.81[EUR][1000 genomes]
rs865318	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377239	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9377242	0.84[EUR][1000 genomes]
rs9498419	0.81[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1020692	chr6:101136992-101426071	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv886457	chr6:101158950-101487473	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv1016353	chr6:101172705-101304041	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	esv2763587	chr6:101277874-101510491	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101184400-101304600	Weak transcription	Hela-S3	cervix
2	chr6:101212000-101281400	Weak transcription	Aorta	Aorta
3	chr6:101213600-101281600	Weak transcription	Gastric	stomach
4	chr6:101214800-101281600	Weak transcription	Left Ventricle	heart
5	chr6:101215200-101311400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr6:101226000-101281400	Weak transcription	HUVEC	blood vessel
7	chr6:101233600-101306600	Weak transcription	K562	blood
8	chr6:101238000-101296200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:101244600-101296200	Weak transcription	NH-A	brain
10	chr6:101249400-101298200	Weak transcription	A549	lung
11	chr6:101252200-101293800	Weak transcription	HMEC	breast
12	chr6:101252200-101295600	Weak transcription	NHDF-Ad	bronchial
13	chr6:101253200-101294800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:101253400-101284400	Weak transcription	Primary B cells from cord blood	blood
15	chr6:101253400-101295600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr6:101253400-101295800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:101253400-101304200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:101253600-101284000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:101253800-101292600	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr6:101253800-101295600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:101257600-101294200	Weak transcription	Osteobl	bone
22	chr6:101258200-101295600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr6:101264000-101295600	Weak transcription	HepG2	liver
24	chr6:101266400-101281400	Weak transcription	Pancreas	Pancrea
25	chr6:101269000-101281600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:101269200-101326600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr6:101271200-101296000	Weak transcription	Ovary	ovary
28	chr6:101271400-101296000	Weak transcription	HSMMtube	muscle
29	chr6:101272200-101289800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:101273600-101291200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:101274600-101295600	Weak transcription	Fetal Thymus	thymus
32	chr6:101274800-101282000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:101275800-101314400	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr6:101276600-101284400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:101276600-101294200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr6:101276600-101295400	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:101277000-101290000	Weak transcription	Fetal Lung	lung
38	chr6:101277000-101295600	Weak transcription	Primary B cells from peripheral blood	blood
39	chr6:101277200-101295800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr6:101277400-101299800	Weak transcription	Esophagus	oesophagus
41	chr6:101277600-101281600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:101277600-101281600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr6:101277600-101281600	Weak transcription	Fetal Stomach	stomach
44	chr6:101277600-101284600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr6:101277600-101288800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr6:101277600-101293600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:101277600-101295400	Weak transcription	Placenta	Placenta
48	chr6:101277600-101295600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:101277600-101295800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr6:101277600-101296000	Weak transcription	Fetal Intestine Large	intestine

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