Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-G0S2-2	chr1:209875871-209876410	NONHSAT009227

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10489341	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs11799643	1.00[CHB][hapmap]
rs12040780	1.00[CHB][hapmap]
rs17015095	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17015099	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs17015326	1.00[MEX][hapmap]
rs56679555	0.93[ASN][1000 genomes]
rs57606822	1.00[ASN][1000 genomes]
rs60132042	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540562	1.00[MEX][hapmap]
rs6680324	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6684236	1.00[MEX][hapmap]
rs73089407	0.86[ASN][1000 genomes]
rs73089412	0.86[ASN][1000 genomes]
rs73089418	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846909	1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846914	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs846915	0.86[ASN][1000 genomes]
rs860185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs861762	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999901	chr1:209600631-210205379	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv873139	chr1:209828955-210050794	Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209870800-209880000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:209870800-209880200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr1:209871000-209877400	Weak transcription	Brain Angular Gyrus	brain
4	chr1:209874000-209877200	Weak transcription	Ovary	ovary
5	chr1:209874200-209877200	Weak transcription	Adipose Nuclei	Adipose
6	chr1:209875200-209877200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr1:209875200-209877800	Enhancers	Brain Cingulate Gyrus	brain
8	chr1:209875200-209878000	Enhancers	Brain Hippocampus Middle	brain
9	chr1:209875200-209882400	Enhancers	Brain Substantia Nigra	brain
10	chr1:209875400-209877400	Weak transcription	Liver	Liver
11	chr1:209876000-209876800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr1:209876000-209877000	Weak transcription	Brain Anterior Caudate	brain
13	chr1:209876000-209877400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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