Variant report

Variant	rs847238
Chromosome Location	chr14:72720785-72720786
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2158987	1.00[ASN][1000 genomes]
rs6574051	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699364	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs699367	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73304937	1.00[ASN][1000 genomes]
rs847232	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs847234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs847242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847253	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847255	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847258	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847280	1.00[ASN][1000 genomes]
rs847281	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs847309	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs847312	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs847316	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs847338	1.00[CEU][hapmap]
rs847340	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs847343	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72706600-72721200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:72712000-72722200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72712800-72722600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72718000-72721400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:72718400-72721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr14:72718400-72721800	Enhancers	Fetal Heart	heart
7	chr14:72719600-72722000	Enhancers	Left Ventricle	heart
8	chr14:72719600-72723000	Enhancers	Placenta	Placenta
9	chr14:72719800-72721000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:72720000-72721000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:72720000-72721000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:72720000-72721000	Weak transcription	Right Ventricle	heart
13	chr14:72720400-72721800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr14:72720400-72722000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr14:72720400-72722000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
16	chr14:72720600-72720800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr14:72720600-72721800	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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