Variant report

Variant	rs847321
Chromosome Location	chr14:72686908-72686909
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:72686361..72688568-chr14:72692682..72695417,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs2158986	0.84[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2158988	0.95[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2238241	0.95[CEU][hapmap];0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2238242	0.96[CEU][hapmap];0.83[CHB][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2238245	0.87[EUR][1000 genomes]
rs2529646	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2529647	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57141704	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58600935	0.80[ASN][1000 genomes]
rs6574054	0.91[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699360	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699361	0.85[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699362	0.92[CEU][hapmap];0.80[CHB][hapmap];0.88[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs699368	0.80[ASN][1000 genomes]
rs8022525	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8022968	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847235	0.89[JPT][hapmap];0.80[ASN][1000 genomes]
rs847236	0.84[JPT][hapmap];0.80[ASN][1000 genomes]
rs847239	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs847240	0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs847254	0.87[CEU][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs847259	0.87[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs847262	0.87[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs847263	0.91[ASN][1000 genomes]
rs847264	0.80[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs847265	0.83[CEU][hapmap];0.81[CHB][hapmap];0.84[JPT][hapmap];0.84[ASN][1000 genomes]
rs847266	0.83[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs847267	0.89[ASN][1000 genomes]
rs847268	0.82[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs847269	0.91[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs847270	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847271	0.92[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847272	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847273	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap]
rs847274	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847275	0.91[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847276	0.92[CEU][hapmap];0.91[CHB][hapmap];0.89[JPT][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847277	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847278	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847279	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847289	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs847297	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs847302	0.92[CEU][hapmap];0.87[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs847305	0.83[CEU][hapmap];0.81[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs847307	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847308	0.91[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs847310	0.96[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs847313	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs847314	0.95[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs847318	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs847319	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs847320	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72686800-72687200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links