Variant report

Variant	rs848542
Chromosome Location	chr2:36707037-36707038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:49284950..49287483-chr2:36706905..36709453,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11124524	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833803	chr2:36589065-36745779	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv581468	chr2:36687111-36715689	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36687200-36712000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36688600-36725600	Weak transcription	Small Intestine	intestine
3	chr2:36702000-36709000	Strong transcription	Hela-S3	cervix
4	chr2:36702400-36712000	Genic enhancers	HUVEC	blood vessel
5	chr2:36703200-36707400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:36703200-36709400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr2:36703200-36710600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:36703200-36712600	Genic enhancers	Osteobl	bone
9	chr2:36703200-36717200	Weak transcription	Brain Substantia Nigra	brain
10	chr2:36703400-36710200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:36703400-36712000	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:36703400-36712800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr2:36703600-36712400	Genic enhancers	NHDF-Ad	bronchial
14	chr2:36703800-36708600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:36703800-36708800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:36703800-36709200	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr2:36703800-36711600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr2:36703800-36713400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
19	chr2:36704000-36707400	Genic enhancers	Placenta	Placenta
20	chr2:36704000-36707600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr2:36704000-36708000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr2:36704000-36709000	Strong transcription	HepG2	liver
23	chr2:36704000-36710200	Strong transcription	ES-I3 Cell Line	embryonic stem cell
24	chr2:36704000-36712000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:36704000-36712200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr2:36704000-36712600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr2:36704200-36707400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr2:36704200-36707400	Strong transcription	Fetal Intestine Small	intestine
29	chr2:36704200-36707400	Genic enhancers	HSMM	muscle
30	chr2:36704200-36707600	Strong transcription	Fetal Kidney	kidney
31	chr2:36704200-36712400	Strong transcription	Fetal Intestine Large	intestine
32	chr2:36704400-36707800	Genic enhancers	Placenta Amnion	Placenta Amnion
33	chr2:36704400-36716200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr2:36704600-36707400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr2:36704600-36708000	Genic enhancers	Stomach Smooth Muscle	stomach
36	chr2:36704600-36711600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr2:36704600-36713200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr2:36704800-36709400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr2:36704800-36736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr2:36705000-36707200	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr2:36705000-36711000	Weak transcription	Fetal Brain Female	brain
42	chr2:36705000-36743200	Weak transcription	Brain Germinal Matrix	brain
43	chr2:36705200-36707600	Genic enhancers	HSMMtube	muscle
44	chr2:36705200-36709400	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr2:36705200-36710000	Weak transcription	Psoas Muscle	Psoas
46	chr2:36705200-36710600	Weak transcription	Primary B cells from cord blood	blood
47	chr2:36705200-36710600	Weak transcription	Right Atrium	heart
48	chr2:36705200-36712000	Genic enhancers	NHLF	lung
49	chr2:36705200-36712200	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr2:36705200-36712200	Weak transcription	Fetal Brain Male	brain

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