Variant report

Variant	rs848641
Chromosome Location	chr2:36785169-36785170
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36782918..36785562-chr2:36785906..36788265,2	K562	blood:

Variant related genes	Relation type
ENSG00000171055	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1179496	0.81[CHB][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs2270333	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs711246	0.94[CHB][hapmap];0.80[AMR][1000 genomes]
rs848516	1.00[CHB][hapmap]
rs848599	0.88[AMR][1000 genomes]
rs848609	0.94[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs848615	0.94[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs848618	0.94[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs848626	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs848628	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs848632	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs848633	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs848634	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36713800-36789600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr2:36729600-36790200	Weak transcription	Small Intestine	intestine
3	chr2:36751000-36824200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:36763200-36785200	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr2:36764000-36790200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr2:36764400-36787200	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr2:36764800-36791800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:36766000-36791800	Weak transcription	Esophagus	oesophagus
9	chr2:36766400-36788600	Weak transcription	Fetal Brain Male	brain
10	chr2:36769800-36790400	Weak transcription	Spleen	Spleen
11	chr2:36771000-36789000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:36771200-36788400	Weak transcription	Stomach Mucosa	stomach
13	chr2:36771400-36802800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr2:36773000-36811200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:36774400-36789000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr2:36776600-36786600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:36776600-36792600	Weak transcription	Right Ventricle	heart
18	chr2:36776600-36804800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr2:36776600-36804800	Weak transcription	Fetal Brain Female	brain
20	chr2:36777400-36786400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:36777400-36786600	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr2:36777400-36790600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr2:36777400-36795000	Weak transcription	Fetal Heart	heart
24	chr2:36777800-36788000	Weak transcription	Brain Anterior Caudate	brain
25	chr2:36778200-36785200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:36778600-36790400	Weak transcription	Psoas Muscle	Psoas
27	chr2:36779200-36786400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr2:36779200-36786600	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr2:36779200-36788800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr2:36779200-36791600	Weak transcription	Fetal Intestine Small	intestine
31	chr2:36779400-36786600	Weak transcription	Hela-S3	cervix
32	chr2:36779400-36788400	Weak transcription	Aorta	Aorta
33	chr2:36779400-36788400	Weak transcription	Ovary	ovary
34	chr2:36779400-36789000	Weak transcription	Brain Hippocampus Middle	brain
35	chr2:36779400-36789600	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr2:36779400-36789600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr2:36779400-36805000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr2:36779800-36786400	Weak transcription	Fetal Lung	lung
39	chr2:36779800-36789200	Weak transcription	Brain Substantia Nigra	brain
40	chr2:36780000-36787800	Weak transcription	Fetal Kidney	kidney
41	chr2:36780000-36804800	Weak transcription	Brain Germinal Matrix	brain
42	chr2:36780400-36785400	Genic enhancers	HUVEC	blood vessel
43	chr2:36780800-36790400	Weak transcription	Pancreas	Pancrea
44	chr2:36781000-36788000	Weak transcription	Brain Angular Gyrus	brain
45	chr2:36781200-36788400	Weak transcription	Left Ventricle	heart
46	chr2:36781400-36786600	Strong transcription	Skeletal Muscle Female	skeletal muscle
47	chr2:36781400-36791800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr2:36781600-36786200	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr2:36782000-36790200	Weak transcription	Thymus	Thymus
50	chr2:36782000-36792400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links