Variant report

Variant	rs851141
Chromosome Location	chr1:223401164-223401165
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:223398506..223401272-chr1:223405321..223406911,2	MCF-7	breast:
2	chr1:223395478..223397290-chr1:223399963..223402713,2	K562	blood:
3	chr1:223388784..223390736-chr1:223399885..223401749,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs851142	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs851208	1.00[AMR][1000 genomes]
rs851213	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223390400-223402400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:223390400-223406400	Weak transcription	Gastric	stomach
3	chr1:223393200-223407800	Weak transcription	Brain Anterior Caudate	brain
4	chr1:223393400-223402000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:223394600-223406800	Weak transcription	Pancreas	Pancrea
6	chr1:223395600-223401600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:223396000-223402400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr1:223396600-223408200	Weak transcription	Brain Angular Gyrus	brain
9	chr1:223398800-223401800	Strong transcription	Ovary	ovary
10	chr1:223399000-223404600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:223399800-223406800	Weak transcription	Esophagus	oesophagus
12	chr1:223400800-223401800	Enhancers	Spleen	Spleen
13	chr1:223400800-223402600	Enhancers	Primary T cells from cord blood	blood
14	chr1:223400800-223402800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr1:223400800-223403200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr1:223400800-223403800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr1:223400800-223404800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:223400800-223405200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:223400800-223408800	Enhancers	Fetal Thymus	thymus
20	chr1:223401000-223401800	Weak transcription	HSMM	muscle
21	chr1:223401000-223405000	Enhancers	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links