Variant report

Variant	rs851207
Chromosome Location	chr1:223419967-223419968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1071171	0.90[EUR][1000 genomes]
rs34424827	0.85[EUR][1000 genomes]
rs851143	0.83[EUR][1000 genomes]
rs851202	0.87[EUR][1000 genomes]
rs851203	0.87[EUR][1000 genomes]
rs851216	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832659	chr1:223294767-223438487	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223413000-223420800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:223414000-223421000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:223414800-223420600	Weak transcription	Primary T cells from cord blood	blood
4	chr1:223415200-223421000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr1:223417200-223423200	Weak transcription	Fetal Intestine Large	intestine
6	chr1:223418000-223420200	Enhancers	K562	blood
7	chr1:223418000-223421400	Weak transcription	Fetal Intestine Small	intestine
8	chr1:223418200-223420400	Weak transcription	Fetal Lung	lung
9	chr1:223418200-223421200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:223418200-223421400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr1:223418200-223421600	Weak transcription	Stomach Mucosa	stomach
12	chr1:223418400-223420800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:223418400-223421200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:223418400-223422600	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr1:223418800-223421000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr1:223419400-223420000	Enhancers	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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