Variant report
| Variant | rs851814 |
|---|---|
| Chromosome Location | chr7:147226358-147226359 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10250939 | 0.84[GIH][hapmap] |
| rs10257834 | 0.84[GIH][hapmap] |
| rs10266173 | 0.84[GIH][hapmap] |
| rs10269376 | 0.84[GIH][hapmap] |
| rs2074715 | 0.84[GIH][hapmap] |
| rs2240376 | 0.84[GIH][hapmap] |
| rs6952758 | 0.84[GIH][hapmap] |
| rs6957033 | 0.84[GIH][hapmap] |
| rs6962824 | 0.84[GIH][hapmap] |
| rs6980002 | 0.84[GIH][hapmap] |
| rs6980460 | 0.84[GIH][hapmap] |
| rs851823 | 0.84[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv931005 | chr7:146730472-147381257 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 7 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs851814 | GIMAP7 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
