Variant report

Variant	rs852243
Chromosome Location	chr5:35923830-35923831
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35775517..35778648-chr5:35922425..35925646,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs852247	0.90[ASN][1000 genomes]
rs852248	0.90[ASN][1000 genomes]
rs852249	0.90[ASN][1000 genomes]
rs852250	0.90[ASN][1000 genomes]
rs860415	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1025695	chr5:35902486-36036934	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv4794	chr5:35906690-35934205	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35915600-35924200	Weak transcription	Primary T cells from cord blood	blood
2	chr5:35919600-35924200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:35920000-35924000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:35920000-35924200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr5:35920000-35924600	Weak transcription	HSMMtube	muscle
6	chr5:35920200-35924000	Weak transcription	Hela-S3	cervix
7	chr5:35920400-35924000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:35920400-35924200	Weak transcription	NHEK	skin
9	chr5:35920600-35924200	Enhancers	Dnd41	blood
10	chr5:35920600-35924400	Enhancers	Thymus	Thymus
11	chr5:35920800-35924200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:35920800-35924400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr5:35921000-35924200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:35922800-35924800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:35923000-35924400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:35923200-35925400	Enhancers	NHLF	lung
17	chr5:35923400-35924000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr5:35923400-35924000	Weak transcription	Fetal Thymus	thymus
19	chr5:35923400-35924200	Enhancers	Osteobl	bone
20	chr5:35923400-35924400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:35923400-35924600	Enhancers	NHDF-Ad	bronchial
22	chr5:35923400-35924800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:35923400-35925600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr5:35923600-35924000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr5:35923600-35924600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:35923600-35924600	Enhancers	HMEC	breast

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