Variant report

Variant	rs852484
Chromosome Location	chr7:5637007-5637008
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:26213863..26216212-chr7:5636879..5638961,2	K562	blood:
2	chr7:5551336..5555391-chr7:5631153..5637818,11	K562	blood:
3	chr7:5531779..5533784-chr7:5636473..5638902,3	K562	blood:
4	chr7:5456394..5459483-chr7:5636546..5638479,3	K562	blood:
5	chr7:5578292..5581169-chr7:5636207..5637791,2	K562	blood:
6	chr7:5563317..5574038-chr7:5630450..5643029,58	K562	blood:

Variant related genes	Relation type
ENSG00000155034	Chromatin interaction
ENSG00000075624	Chromatin interaction
ENSG00000188365	Chromatin interaction
ENSG00000241269	Chromatin interaction
ENSG00000263900	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1640238	0.87[ASN][1000 genomes]
rs1640240	0.87[ASN][1000 genomes]
rs1725182	0.87[ASN][1000 genomes]
rs2966446	0.87[ASN][1000 genomes]
rs852481	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs852483	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	esv1814049	chr7:5314993-5675131	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	333 gene(s)	inside rSNPs	diseases
5	esv1820266	chr7:5332088-5665173	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
6	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
7	nsv887404	chr7:5402606-5667645	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
8	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
9	nsv887408	chr7:5432672-5667645	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	331 gene(s)	inside rSNPs	diseases
10	nsv830890	chr7:5464933-5705158	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	322 gene(s)	inside rSNPs	diseases
11	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
12	nsv1025434	chr7:5537571-5705283	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	297 gene(s)	inside rSNPs	diseases
13	nsv482449	chr7:5557585-5743673	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	294 gene(s)	inside rSNPs	diseases
14	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
15	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
16	nsv887414	chr7:5584934-5667645	Flanking Bivalent TSS/Enh Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
17	nsv887415	chr7:5584934-5675305	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
18	nsv887416	chr7:5584934-5695259	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
19	nsv530467	chr7:5617816-5815082	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
20	nsv1017612	chr7:5629728-5819144	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
21	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5634400-5639600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:5634800-5640200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr7:5635600-5639400	Enhancers	Spleen	Spleen
4	chr7:5635800-5642800	Weak transcription	Aorta	Aorta
5	chr7:5636000-5637200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:5636000-5639800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr7:5636200-5639200	Enhancers	Fetal Brain Male	brain
8	chr7:5636200-5639600	Enhancers	H1 Cell Line	embryonic stem cell
9	chr7:5636200-5642600	Weak transcription	HepG2	liver
10	chr7:5636200-5662000	Weak transcription	Fetal Kidney	kidney
11	chr7:5636400-5637200	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:5636400-5637400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr7:5636400-5637600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr7:5636400-5637600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr7:5636400-5637800	Weak transcription	Left Ventricle	heart
16	chr7:5636400-5638200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr7:5636400-5638600	Enhancers	Stomach Smooth Muscle	stomach
18	chr7:5636400-5638800	Enhancers	Fetal Lung	lung
19	chr7:5636400-5639000	Enhancers	Adipose Nuclei	Adipose
20	chr7:5636400-5639000	Genic enhancers	Fetal Muscle Leg	muscle
21	chr7:5636400-5639600	Genic enhancers	Fetal Stomach	stomach
22	chr7:5636400-5639600	Enhancers	Ovary	ovary
23	chr7:5636400-5639800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr7:5636400-5640200	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr7:5636400-5642600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:5636600-5637600	Weak transcription	Esophagus	oesophagus
27	chr7:5636600-5637600	Weak transcription	Fetal Heart	heart
28	chr7:5636600-5637600	Weak transcription	Lung	lung
29	chr7:5636600-5637600	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr7:5636600-5637600	Enhancers	A549	lung
31	chr7:5636600-5637800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr7:5636600-5637800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:5636600-5637800	Weak transcription	Right Atrium	heart
34	chr7:5636600-5637800	Enhancers	NH-A	brain
35	chr7:5636600-5638000	Genic enhancers	HUES64 Cell Line	embryonic stem cell
36	chr7:5636600-5638000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr7:5636600-5638000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr7:5636600-5638000	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr7:5636600-5638200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr7:5636600-5638200	Weak transcription	Duodenum Mucosa	Duodenum
41	chr7:5636600-5638400	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr7:5636600-5639200	Enhancers	Colonic Mucosa	Colon
43	chr7:5636600-5639200	Genic enhancers	Osteobl	bone
44	chr7:5636600-5639600	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr7:5636600-5640000	Genic enhancers	Fetal Muscle Trunk	muscle
46	chr7:5636600-5643400	Weak transcription	Pancreas	Pancrea
47	chr7:5636600-5661400	Weak transcription	Rectal Smooth Muscle	rectum
48	chr7:5636800-5637200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr7:5636800-5637200	Enhancers	K562	blood
50	chr7:5636800-5637400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links