Variant report

Variant	rs852805
Chromosome Location	chr1:58324711-58324712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr1:58324267-58324760	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
DAB1-AS1	TF binding region

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1202782	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1202784	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1202824	0.88[CEU][hapmap];0.84[CHB][hapmap];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1202825	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1202827	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs2038380	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs706412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs722187	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs852792	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs852793	0.85[AMR][1000 genomes]
rs852795	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs852798	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs852806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs852807	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58320400-58325800	Weak transcription	Fetal Brain Female	brain
2	chr1:58320800-58330400	Weak transcription	Fetal Brain Male	brain
3	chr1:58321000-58325600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:58321000-58325800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr1:58321000-58326000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:58321200-58325800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:58322400-58327000	Enhancers	HMEC	breast
8	chr1:58322600-58325400	Enhancers	NHEK	skin
9	chr1:58322600-58327000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:58322800-58324800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:58323600-58325000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:58323800-58325000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr1:58324000-58324800	Enhancers	H1 Cell Line	embryonic stem cell
14	chr1:58324000-58324800	Enhancers	H9 Cell Line	embryonic stem cell
15	chr1:58324000-58324800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:58324000-58325400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr1:58324200-58325000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr1:58324200-58325000	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr1:58324600-58326000	Weak transcription	Placenta	Placenta
20	chr1:58324600-58326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:58324600-58326600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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