Variant report

Variant	rs852942
Chromosome Location	chr6:72163005-72163006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs472572	0.81[ASN][1000 genomes]
rs478959	0.81[ASN][1000 genomes]
rs492196	0.83[EUR][1000 genomes]
rs503993	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs504983	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs524110	0.83[EUR][1000 genomes]
rs537876	0.81[ASN][1000 genomes]
rs543625	0.81[ASN][1000 genomes]
rs547558	0.83[EUR][1000 genomes]
rs548456	0.83[EUR][1000 genomes]
rs555643	0.83[EUR][1000 genomes]
rs580319	0.83[EUR][1000 genomes]
rs6927433	0.86[CEU][hapmap];0.84[TSI][hapmap];0.88[EUR][1000 genomes]
rs852943	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852947	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852959	0.89[EUR][1000 genomes]
rs875842	0.86[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72156000-72167400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:72162200-72163400	Enhancers	Fetal Lung	lung
3	chr6:72162400-72163200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr6:72162400-72163200	Enhancers	Fetal Brain Female	brain
5	chr6:72162400-72163200	Enhancers	Fetal Stomach	stomach
6	chr6:72162600-72163400	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:72162600-72167400	Weak transcription	HSMMtube	muscle
8	chr6:72162800-72170400	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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