Variant report

Variant	rs852966
Chromosome Location	chr6:72134420-72134421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1192038	0.89[CEU][hapmap];0.91[CHD][hapmap];0.82[JPT][hapmap]
rs1527714	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4707914	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6921100	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6927433	0.85[GIH][hapmap];0.90[MEX][hapmap];0.87[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs852932	1.00[CEU][hapmap];0.88[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs852933	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs852959	0.83[EUR][1000 genomes]
rs852962	0.80[JPT][hapmap]
rs852963	0.94[CEU][hapmap];0.87[JPT][hapmap];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs852965	0.87[ASN][1000 genomes]
rs852967	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs875842	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830684	chr6:72094842-72282684	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	488 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs852966	GSTM1	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:72131200-72139400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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