Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80601112..80603170-chr7:80604484..80606364,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SEMA3C-1	chr7:80601832-80604040	NONHSAT121756

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10242487	1.00[ASN][1000 genomes]
rs10264043	1.00[ASN][1000 genomes]
rs11977933	1.00[CHB][hapmap]
rs12666421	1.00[CHB][hapmap]
rs12671203	1.00[CHB][hapmap]
rs12673546	1.00[CHB][hapmap]
rs4259358	1.00[ASN][1000 genomes]
rs471783	1.00[CHB][hapmap]
rs4731944	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs492377	1.00[CHB][hapmap]
rs500454	1.00[CHB][hapmap]
rs512906	1.00[CHB][hapmap]
rs517609	1.00[CHB][hapmap]
rs551994	1.00[CHB][hapmap]
rs767185	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs853034	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs853059	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs853060	1.00[ASN][1000 genomes]
rs972504	1.00[ASN][1000 genomes]
rs996720	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv1034690	chr7:80520004-80987682	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv888549	chr7:80553950-80652059	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888550	chr7:80584388-80644661	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv5812	chr7:80601278-80645927	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80597400-80604200	Weak transcription	Aorta	Aorta

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