Variant report

Variant	rs853153
Chromosome Location	chr5:142626184-142626185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:142618037..142621776-chr5:142622576..142626628,5	K562	blood:
2	chr5:142478262..142480394-chr5:142625617..142627473,2	K562	blood:
3	chr5:142624808..142627195-chr5:142636221..142638169,2	K562	blood:
4	chr5:142597747..142599830-chr5:142625917..142627596,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs258756	0.80[ASN][1000 genomes]
rs853155	0.92[ASN][1000 genomes]
rs853180	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1825941	chr5:142568715-142728031	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142603600-142628400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr5:142618800-142628400	Weak transcription	Left Ventricle	heart
3	chr5:142619600-142626400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:142620000-142626400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:142620200-142628200	Weak transcription	Liver	Liver
6	chr5:142621400-142626400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr5:142621600-142626400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:142621800-142626600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:142622600-142626200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr5:142622600-142626400	Flanking Active TSS	A549	lung
11	chr5:142623200-142632200	Enhancers	K562	blood
12	chr5:142623600-142628400	Weak transcription	Right Atrium	heart
13	chr5:142623600-142628600	Weak transcription	Aorta	Aorta
14	chr5:142624000-142626200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:142624000-142628400	Weak transcription	Esophagus	oesophagus
16	chr5:142624200-142626200	Enhancers	HepG2	liver
17	chr5:142624200-142626400	Enhancers	NHEK	skin
18	chr5:142624200-142628200	Weak transcription	Fetal Lung	lung
19	chr5:142624400-142626200	Enhancers	NH-A	brain
20	chr5:142624400-142626200	Enhancers	NHLF	lung
21	chr5:142624400-142628400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:142624400-142628800	Weak transcription	Colon Smooth Muscle	Colon
23	chr5:142624600-142626200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:142624600-142626200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:142624600-142627400	Enhancers	HMEC	breast
26	chr5:142624600-142628600	Weak transcription	Adipose Nuclei	Adipose
27	chr5:142624800-142626200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:142624800-142626200	Enhancers	HSMM	muscle
29	chr5:142624800-142626200	Enhancers	HSMMtube	muscle
30	chr5:142624800-142626200	Enhancers	NHDF-Ad	bronchial
31	chr5:142624800-142626400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:142624800-142626400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr5:142624800-142626400	Enhancers	Osteobl	bone
34	chr5:142625000-142628600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:142625200-142626200	Enhancers	HUVEC	blood vessel
36	chr5:142625400-142626200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr5:142625400-142626200	Enhancers	Placenta	Placenta
38	chr5:142625800-142626200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:142625800-142628400	Enhancers	Hela-S3	cervix
40	chr5:142626000-142626200	Enhancers	Psoas Muscle	Psoas
41	chr5:142626000-142627400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr5:142626000-142628400	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:142626000-142628400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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