Variant report
| Variant | rs853546 |
|---|---|
| Chromosome Location | chr12:26053458-26053459 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:26052571..26054359-chr12:26055750..26057714,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs10771247 | 0.85[AMR][1000 genomes] |
| rs1167618 | 0.83[AMR][1000 genomes] |
| rs1167619 | 0.85[AMR][1000 genomes] |
| rs1177524 | 0.86[AMR][1000 genomes] |
| rs1183807 | 0.86[AMR][1000 genomes] |
| rs1797965 | 0.86[AMR][1000 genomes] |
| rs2634170 | 0.86[AMR][1000 genomes] |
| rs2643928 | 0.86[AMR][1000 genomes] |
| rs4246236 | 0.83[AMR][1000 genomes] |
| rs706539 | 0.86[AMR][1000 genomes] |
| rs7954454 | 0.85[AMR][1000 genomes] |
| rs829823 | 0.86[AMR][1000 genomes] |
| rs829824 | 0.82[AMR][1000 genomes] |
| rs829825 | 0.86[AMR][1000 genomes] |
| rs829826 | 0.86[AMR][1000 genomes] |
| rs829827 | 0.86[AMR][1000 genomes] |
| rs844202 | 0.86[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2758300 | chr12:25992331-26161116 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
| 2 | esv2759886 | chr12:25992331-26161116 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 38 gene(s) | inside rSNPs | diseases |
| 3 | nsv1035319 | chr12:26020667-26097148 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNAmiRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:26050400-26076800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
