Variant report

Variant	rs854366
Chromosome Location	chr14:25262952-25262953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25257418..25259625-chr14:25262130..25263668,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10145406	0.92[EUR][1000 genomes]
rs12587304	0.98[ASN][1000 genomes]
rs12589949	0.80[ASN][1000 genomes]
rs8022986	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs854361	0.86[AFR][1000 genomes]
rs854363	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs854365	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs854368	0.87[AFR][1000 genomes]
rs854373	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs854379	0.81[AFR][1000 genomes]
rs860540	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901505	chr14:25237268-25360584	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1046542	chr14:25244806-25267208	Weak transcription Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1045403	chr14:25249822-25271815	Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv564063	chr14:25253343-25262952	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3527118	chr14:25260312-25264710	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv564065	chr14:25261017-25262952	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv820216	chr14:25262148-25263226	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3527140	chr14:25262201-25263230	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3527162	chr14:25262257-25263200	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3527129	chr14:25262265-25263202	Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv3527151	chr14:25262271-25263152	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv826902	chr14:25262279-25263198	Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv21242	chr14:25262297-25263072	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3419428	chr14:25262299-25263147	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv3527107	chr14:25262319-25263132	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv3527174	chr14:25262335-25263128	Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
20	nsv564067	chr14:25262373-25262952	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
21	nsv564068	chr14:25262373-25264662	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
22	nsv564069	chr14:25262397-25262952	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv564070	chr14:25262527-25264662	Bivalent Enhancer Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	nsv826903	chr14:25262603-25263198	Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25259000-25263800	Weak transcription	Fetal Brain Male	brain
2	chr14:25261800-25264400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr14:25261800-25268200	Weak transcription	Fetal Lung	lung
4	chr14:25262400-25263400	Bivalent Enhancer	HepG2	liver

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