Variant report

Variant	rs854407
Chromosome Location	chr14:25204407-25204408
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1101640	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2614510	0.81[EUR][1000 genomes]
rs854348	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs854407	OR4L1	cis	cerebellum	SCAN
rs854407	OR6S1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25204000-25204600	Enhancers	Brain Hippocampus Middle	brain
2	chr14:25204000-25205000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:25204200-25204800	Enhancers	Fetal Lung	lung
4	chr14:25204400-25204600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr14:25204400-25204800	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr14:25204400-25204800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:25204400-25204800	Enhancers	Brain Angular Gyrus	brain
8	chr14:25204400-25204800	Enhancers	Fetal Intestine Large	intestine
9	chr14:25204400-25205000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr14:25204400-25205000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr14:25204400-25205000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:25204400-25205000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:25204400-25205000	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr14:25204400-25206200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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