Variant report

Variant	rs855740
Chromosome Location	chr7:149367798-149367799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:149365654..149368129-chr7:149438510..149441107,2	K562	blood:
2	chr7:149363871..149368129-chr7:149438510..149443651,4	K562	blood:
3	chr7:149286594..149288759-chr7:149366383..149368042,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1101865	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1636043	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs855739	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs855749	0.90[CHB][hapmap]
rs855751	0.90[CHB][hapmap];0.82[CHD][hapmap]
rs855757	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs863042	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1023901	chr7:149364044-149747442	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	nsv539191	chr7:149364044-149747442	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs855740	FASTK	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149360200-149370400	Weak transcription	Placenta	Placenta
2	chr7:149366600-149368000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:149367000-149368000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr7:149367000-149368200	Enhancers	Fetal Muscle Leg	muscle
5	chr7:149367000-149368400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr7:149367200-149367800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:149367200-149367800	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr7:149367200-149368000	Enhancers	Rectal Smooth Muscle	rectum
9	chr7:149367200-149368200	Enhancers	Brain Hippocampus Middle	brain
10	chr7:149367200-149368200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr7:149367200-149368200	Enhancers	Fetal Heart	heart
12	chr7:149367400-149367800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:149367400-149367800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:149367400-149367800	Enhancers	Adipose Nuclei	Adipose
15	chr7:149367400-149367800	Flanking Active TSS	Brain Cingulate Gyrus	brain
16	chr7:149367400-149367800	Flanking Active TSS	Fetal Lung	lung
17	chr7:149367400-149367800	Enhancers	Ovary	ovary
18	chr7:149367400-149367800	Active TSS	HSMMtube	muscle
19	chr7:149367400-149368000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:149367400-149368000	Enhancers	Fetal Stomach	stomach
21	chr7:149367400-149368000	Enhancers	Osteobl	bone
22	chr7:149367400-149368200	Active TSS	Brain Anterior Caudate	brain
23	chr7:149367600-149367800	Enhancers	Colon Smooth Muscle	Colon
24	chr7:149367600-149368000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
25	chr7:149367600-149368000	Flanking Active TSS	Stomach Smooth Muscle	stomach
26	chr7:149367600-149368200	Enhancers	Brain Angular Gyrus	brain

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