Variant report

Variant	rs856073
Chromosome Location	chr1:158931673-158931674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1102001	0.95[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16841144	1.00[MEX][hapmap]
rs2793855	0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6694926	1.00[MEX][hapmap]
rs856081	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856082	1.00[MEX][hapmap]
rs856083	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs856086	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002401	chr1:158712627-158972031	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3376764	chr1:158761947-158998617	Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1007597	chr1:158874806-158934301	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3369957	chr1:158915589-159003393	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158920600-158950600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:158923000-158932400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr1:158923000-158949600	Weak transcription	Primary B cells from cord blood	blood
4	chr1:158928800-158932400	Strong transcription	Primary T cells from cord blood	blood
5	chr1:158929200-158932800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr1:158930000-158932400	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:158930600-158933000	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr1:158931000-158931800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:158931000-158932400	Strong transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:158931000-158932800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr1:158931200-158931800	Strong transcription	Spleen	Spleen
12	chr1:158931200-158931800	Enhancers	NHEK	skin
13	chr1:158931200-158933000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:158931200-158933400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr1:158931200-158933400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr1:158931400-158932200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:158931600-158932000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:158931600-158939600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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