Variant report

Variant	rs856648
Chromosome Location	chr6:140246019-140246020
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139693225..139698326-chr6:140245231..140252808,11	MCF-7	breast:
2	chr6:139694148..139697049-chr6:140245084..140246789,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs660269	0.88[ASN][1000 genomes]
rs7744208	0.81[ASN][1000 genomes]
rs7760148	0.84[ASN][1000 genomes]
rs856649	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140227000-140247600	Weak transcription	Small Intestine	intestine
2	chr6:140239800-140246400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140239800-140251600	Weak transcription	Colon Smooth Muscle	Colon
4	chr6:140240000-140248000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:140241400-140247200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:140241800-140247200	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:140241800-140247800	Weak transcription	Fetal Heart	heart
8	chr6:140242200-140246200	Weak transcription	Osteobl	bone
9	chr6:140242200-140247200	Weak transcription	K562	blood
10	chr6:140242400-140246600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:140242400-140246600	Weak transcription	Brain Germinal Matrix	brain
12	chr6:140242400-140247000	Weak transcription	Fetal Brain Male	brain
13	chr6:140242400-140254000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:140242400-140260200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:140242800-140254400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:140243800-140247200	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr6:140243800-140247600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr6:140244000-140246600	Weak transcription	Fetal Intestine Large	intestine
19	chr6:140245000-140249000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr6:140245400-140246400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr6:140246000-140249400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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