Variant report

Variant	rs856790
Chromosome Location	chr3:144070389-144070390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1019950	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1102118	0.86[EUR][1000 genomes]
rs1102120	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1102121	0.82[AMR][1000 genomes]
rs1102122	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs197827	0.81[EUR][1000 genomes]
rs197828	0.86[EUR][1000 genomes]
rs197855	0.86[EUR][1000 genomes]
rs6440243	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs708476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856782	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs856786	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs856792	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856797	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs856799	0.80[EUR][1000 genomes]
rs856800	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs856801	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs905524	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144068600-144070600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:144069400-144071600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr3:144069600-144070600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:144069600-144071400	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:144069800-144070800	Enhancers	Adipose Nuclei	Adipose
6	chr3:144069800-144071200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr3:144069800-144071400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr3:144070000-144070600	Weak transcription	Fetal Kidney	kidney
9	chr3:144070200-144070400	Enhancers	Fetal Lung	lung
10	chr3:144070200-144071200	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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