The 2.0 version of rSNPBase

Variant report

Variant rs857287
Chromosome Location chr5:80098957-80098958
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:79971800-80112400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr5:79985000-80100600 Weak transcription Brain Germinal Matrix brain
3 chr5:79998800-80109400 Weak transcription Brain Inferior Temporal Lobe brain
4 chr5:80041200-80100400 Weak transcription Gastric stomach
5 chr5:80042800-80118200 Weak transcription Spleen Spleen
6 chr5:80042800-80173400 Weak transcription Right Ventricle heart
7 chr5:80073400-80112800 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr5:80075200-80114000 Weak transcription Stomach Mucosa stomach
9 chr5:80076200-80109600 Weak transcription HepG2 liver
10 chr5:80077400-80108000 Weak transcription ES-WA7 Cell Line embryonic stem cell
11 chr5:80077600-80112000 Weak transcription Muscle Satellite Cultured Cells --
12 chr5:80077600-80118800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
13 chr5:80083000-80101400 Strong transcription Monocytes-CD14+_RO01746 blood
14 chr5:80085200-80127600 Weak transcription Primary T helper naive cells from peripheral blood blood
15 chr5:80087400-80132800 Weak transcription Primary T killer memory cells from peripheral blood blood
16 chr5:80087800-80167400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr5:80088200-80109600 Weak transcription Placenta Amnion Placenta Amnion
18 chr5:80089400-80110400 Weak transcription Hela-S3 cervix
19 chr5:80089400-80118400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr5:80089400-80120200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
21 chr5:80089600-80100000 Weak transcription HMEC breast
22 chr5:80089600-80109200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
23 chr5:80089600-80110200 Weak transcription Brain Angular Gyrus brain
24 chr5:80089600-80118400 Weak transcription NHEK skin
25 chr5:80089800-80112400 Weak transcription K562 blood
26 chr5:80089800-80118400 Weak transcription HUES6 Cell Line embryonic stem cell
27 chr5:80090000-80109400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr5:80090000-80111000 Weak transcription H1 Cell Line embryonic stem cell
29 chr5:80090000-80118600 Weak transcription iPS-20b Cell Line embryonic stem cell
30 chr5:80090200-80109200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
31 chr5:80090200-80118400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr5:80090400-80124600 Weak transcription Colon Smooth Muscle Colon
33 chr5:80090600-80109400 Weak transcription HSMMtube muscle
34 chr5:80090600-80124000 Weak transcription Primary T helper cells PMA-I stimulated --
35 chr5:80091000-80103400 Weak transcription Ovary ovary
36 chr5:80091000-80109200 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr5:80091000-80109200 Weak transcription Skeletal Muscle Male skeletal muscle
38 chr5:80091000-80109400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
39 chr5:80091000-80116600 Weak transcription A549 lung
40 chr5:80091200-80109000 Weak transcription HSMM muscle
41 chr5:80091200-80109200 Weak transcription Primary T helper naive cells fromperipheralblood blood
42 chr5:80091200-80110600 Weak transcription HUES64 Cell Line embryonic stem cell
43 chr5:80091200-80116000 Weak transcription Brain Substantia Nigra brain
44 chr5:80091200-80144400 Weak transcription Stomach Smooth Muscle stomach
45 chr5:80091400-80100400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr5:80091400-80109200 Weak transcription Placenta Placenta
47 chr5:80091400-80109200 Weak transcription Skeletal Muscle Female skeletal muscle
48 chr5:80091400-80109400 Weak transcription Primary hematopoietic stem cells short term culture blood
49 chr5:80091400-80109400 Weak transcription Fetal Thymus thymus
50 chr5:80091400-80114200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015