Variant report

Variant	rs858100
Chromosome Location	chr1:168424141-168424142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr1:168423435-168424288	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr1:168423448-168424267	SK-N-SH	brain:	n/a	chr1:168423529-168423540
3	PBX3	chr1:168423519-168424205	SK-N-SH	brain:	n/a	n/a
4	EP300	chr1:168423000-168424398	SK-N-SH	brain:	n/a	n/a
5	JUND	chr1:168422567-168424278	SK-N-SH	brain:	n/a	chr1:168423259-168423271 chr1:168423630-168423641 chr1:168423385-168423396
6	JUND	chr1:168423464-168424278	SK-N-SH	brain:	n/a	chr1:168423630-168423641
7	NFIC	chr1:168423555-168424322	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr1:168423518-168424308	SK-N-SH	brain:	n/a	chr1:168423529-168423540
9	FOSL2	chr1:168423563-168424306	SK-N-SH	brain:	n/a	chr1:168423630-168423641
10	JUND	chr1:168423504-168424240	SK-N-SH	brain:	n/a	chr1:168423630-168423641
11	PBX3	chr1:168423085-168424323	SK-N-SH	brain:	n/a	n/a
12	EP300	chr1:168423473-168424360	SK-N-SH	brain:	n/a	n/a
13	EP300	chr1:168423448-168424257	SK-N-SH	brain:	n/a	n/a
14	TEAD4	chr1:168423544-168424210	SK-N-SH	brain:	n/a	n/a
15	TCF12	chr1:168423100-168424347	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:168421956..168424286-chr1:168536137..168537722,2	K562	blood:
2	chr1:168420619..168422390-chr1:168422440..168424154,2	K562	blood:

Variant related genes	Relation type
QRSL1P1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1102316	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1102317	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12031090	0.86[ASN][1000 genomes]
rs7535780	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs858098	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168422800-168425400	Weak transcription	HepG2	liver
2	chr1:168422800-168425800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:168422800-168426200	Enhancers	NHDF-Ad	bronchial
4	chr1:168423000-168425000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr1:168423000-168426200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:168423000-168426200	Enhancers	HSMMtube	muscle
7	chr1:168423000-168426600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:168423000-168426600	Enhancers	HMEC	breast
9	chr1:168423000-168430600	Weak transcription	Liver	Liver
10	chr1:168423200-168424800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr1:168423400-168424200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:168423400-168424600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:168423400-168424600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:168423400-168425400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:168423400-168426400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:168423400-168427200	Enhancers	NHEK	skin
17	chr1:168423600-168425200	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:168423800-168424600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr1:168423800-168425400	Weak transcription	NH-A	brain
20	chr1:168424000-168425400	Weak transcription	Osteobl	bone
21	chr1:168424000-168425600	Weak transcription	Rectal Smooth Muscle	rectum

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