Variant report

Variant	rs858672
Chromosome Location	chr17:45269868-45269869
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr17:45269815-45270406	GM12878	blood:	n/a	n/a
2	ZNF384	chr17:45269867-45270272	GM12878	blood:	n/a	n/a
3	TCF12	chr17:45269865-45270181	GM12878	blood:	n/a	n/a
4	RUNX3	chr17:45269862-45270458	GM12878	blood:	n/a	n/a
5	MTA3	chr17:45269839-45270406	GM12878	blood:	n/a	n/a
6	NFIC	chr17:45269807-45270341	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
CDC27	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs221603	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs221607	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45266800-45270200	Weak transcription	Small Intestine	intestine
2	chr17:45266800-45277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:45267200-45270000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr17:45267200-45270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:45267200-45270200	Weak transcription	HSMM	muscle
6	chr17:45267200-45275000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr17:45267200-45277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr17:45267400-45270000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr17:45267400-45270000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr17:45267400-45270000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr17:45267600-45270200	Weak transcription	Primary B cells from cord blood	blood
12	chr17:45268400-45270600	Enhancers	HepG2	liver
13	chr17:45268400-45281000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr17:45268800-45270000	Weak transcription	K562	blood
15	chr17:45268800-45270200	Weak transcription	HSMMtube	muscle
16	chr17:45268800-45270800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:45269000-45270400	Enhancers	Primary B cells from peripheral blood	blood
18	chr17:45269000-45270600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr17:45269000-45271000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr17:45269400-45270000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr17:45269400-45270600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr17:45269400-45270600	Enhancers	GM12878-XiMat	blood
23	chr17:45269400-45270800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr17:45269400-45270800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr17:45269600-45270400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr17:45269800-45270600	Enhancers	Spleen	Spleen
27	chr17:45269800-45270800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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