Variant report

Variant	rs858673
Chromosome Location	chr17:45268929-45268930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr17:45268759-45268981	A549	lung:	n/a	chr17:45268892-45268903
2	CEBPB	chr17:45268730-45269023	K562	blood:	n/a	chr17:45268892-45268903
3	CEBPB	chr17:45268757-45269021	HepG2	liver:	n/a	chr17:45268892-45268903

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45264174..45269379-chr17:45283146..45288200,6	K562	blood:

Variant related genes	Relation type
CDC27	TF binding region
ENSG00000198336	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12946597	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1515751	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1515752	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs188799	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2071438	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs221597	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs221598	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs221599	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs221602	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3785875	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4968309	0.88[ASN][1000 genomes]
rs6504745	0.82[ASN][1000 genomes]
rs701982	0.84[ASN][1000 genomes]
rs764792	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8071382	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8076808	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs858679	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9905948	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45266800-45270200	Weak transcription	Small Intestine	intestine
2	chr17:45266800-45277800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:45267200-45269000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr17:45267200-45269000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr17:45267200-45269200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:45267200-45269400	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr17:45267200-45270000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr17:45267200-45270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr17:45267200-45270200	Weak transcription	HSMM	muscle
10	chr17:45267200-45275000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr17:45267200-45277200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr17:45267400-45269400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr17:45267400-45269400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:45267400-45269400	Weak transcription	GM12878-XiMat	blood
15	chr17:45267400-45269600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr17:45267400-45270000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:45267400-45270000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr17:45267400-45270000	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr17:45267600-45270200	Weak transcription	Primary B cells from cord blood	blood
20	chr17:45268400-45269600	Enhancers	Placenta	Placenta
21	chr17:45268400-45270600	Enhancers	HepG2	liver
22	chr17:45268400-45281000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr17:45268600-45269000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr17:45268800-45269400	Enhancers	Stomach Mucosa	stomach
25	chr17:45268800-45270000	Weak transcription	K562	blood
26	chr17:45268800-45270200	Weak transcription	HSMMtube	muscle
27	chr17:45268800-45270800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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