Variant report

Variant	rs858975
Chromosome Location	chr6:27155623-27155624
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:26)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:26 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27154198..27156038-chr6:27159087..27161685,2	MCF-7	breast:
2	chr6:27155406..27158362-chr6:27858378..27860998,5	K562	blood:
3	chr6:27148219..27154668-chr6:27154722..27158254,9	K562	blood:
4	chr6:27145218..27148337-chr6:27151646..27158450,9	MCF-7	breast:
5	chr6:27154554..27158026-chr6:27757603..27761465,4	K562	blood:
6	chr6:27155042..27157581-chr6:27762343..27765282,2	K562	blood:
7	chr6:27150672..27153341-chr6:27153761..27155795,3	MCF-7	breast:
8	chr6:27153641..27158263-chr6:27858563..27861801,5	K562	blood:
9	chr6:27155262..27157566-chr6:27266020..27269001,2	K562	blood:
10	chr6:27114727..27117926-chr6:27154560..27156609,3	K562	blood:
11	chr6:27114939..27117742-chr6:27153749..27157823,5	K562	blood:
12	chr6:27154833..27157823-chr6:27782934..27785900,2	K562	blood:
13	chr6:27154260..27155926-chr6:27167713..27170180,2	K562	blood:
14	chr6:27150639..27152459-chr6:27154596..27157395,2	MCF-7	breast:
15	chr6:27154842..27156986-chr6:27301919..27304257,2	K562	blood:
16	chr6:27154865..27156812-chr6:27464410..27466083,2	K562	blood:
17	chr6:27155528..27159493-chr6:27776465..27779576,3	K562	blood:
18	chr6:27154773..27157322-chr6:27634142..27636330,2	MCF-7	breast:
19	chr6:27155324..27157508-chr6:27634451..27636223,2	K562	blood:
20	chr6:27130956..27132580-chr6:27154818..27157126,2	K562	blood:
21	chr6:27130515..27132785-chr6:27154818..27157852,3	K562	blood:
22	chr6:27155275..27158320-chr6:27568064..27571527,3	K562	blood:
23	chr6:27154220..27156812-chr6:27776425..27779440,4	K562	blood:
24	chr6:27145758..27149060-chr6:27154386..27156904,3	MCF-7	breast:
25	chr6:27154579..27158488-chr6:27757538..27761648,4	MCF-7	breast:
26	chr6:27143412..27146140-chr6:27152536..27156532,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000203813	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1102558	0.81[ASN][1000 genomes]
rs858967	0.81[ASN][1000 genomes]
rs858968	0.81[ASN][1000 genomes]
rs858969	0.81[ASN][1000 genomes]
rs858970	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	esv3356749	chr6:27155446-27163661	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27146600-27155800	Weak transcription	Spleen	Spleen
2	chr6:27155000-27157000	Active TSS	Right Atrium	heart
3	chr6:27155200-27156400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:27155200-27156600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:27155200-27156800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:27155200-27156800	Active TSS	Osteobl	bone
7	chr6:27155200-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:27155400-27155800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr6:27155400-27155800	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:27155400-27155800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
11	chr6:27155400-27155800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:27155400-27155800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr6:27155400-27155800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:27155400-27155800	Flanking Active TSS	Duodenum Mucosa	Duodenum
15	chr6:27155400-27155800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
16	chr6:27155400-27155800	Active TSS	Rectal Mucosa Donor 29	rectum
17	chr6:27155400-27155800	Active TSS	Rectal Smooth Muscle	rectum
18	chr6:27155400-27155800	Flanking Active TSS	Stomach Smooth Muscle	stomach
19	chr6:27155400-27156000	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:27155400-27156000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr6:27155400-27156000	Weak transcription	Small Intestine	intestine
22	chr6:27155400-27156200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:27155400-27156200	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr6:27155400-27156800	Active TSS	H1 Cell Line	embryonic stem cell
25	chr6:27155400-27156800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:27155400-27156800	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr6:27155400-27156800	Active TSS	Muscle Satellite Cultured Cells	--
28	chr6:27155400-27156800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:27155400-27156800	Flanking Active TSS	Adipose Nuclei	Adipose
30	chr6:27155400-27156800	Active TSS	Colon Smooth Muscle	Colon
31	chr6:27155400-27156800	Active TSS	Duodenum Smooth Muscle	Duodenum
32	chr6:27155400-27156800	Active TSS	Fetal Intestine Large	intestine
33	chr6:27155400-27156800	Active TSS	Fetal Intestine Small	intestine
34	chr6:27155400-27156800	Active TSS	Fetal Lung	lung
35	chr6:27155400-27156800	Active TSS	Fetal Stomach	stomach
36	chr6:27155400-27156800	Active TSS	Ovary	ovary
37	chr6:27155400-27156800	Active TSS	Rectal Mucosa Donor 31	rectum
38	chr6:27155400-27156800	Active TSS	Thymus	Thymus
39	chr6:27155400-27156800	Active TSS	HMEC	breast
40	chr6:27155400-27156800	Active TSS	NHDF-Ad	bronchial
41	chr6:27155400-27156800	Active TSS	NHLF	lung
42	chr6:27155400-27157000	Active TSS	H9 Cell Line	embryonic stem cell
43	chr6:27155400-27157000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:27155400-27157000	Active TSS	iPS-20b Cell Line	embryonic stem cell
45	chr6:27155400-27157000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:27155400-27157000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr6:27155400-27157000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:27155400-27157000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:27155400-27157000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:27155400-27157000	Active TSS	Fetal Kidney	kidney

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