Variant report
| Variant | rs858979 |
|---|---|
| Chromosome Location | chr6:27163116-27163117 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:27161961..27163515-chr6:27727995..27729647,2 | K562 | blood: | |
| 2 | chr6:27160523..27163263-chr6:27832952..27835255,2 | K562 | blood: | |
| 3 | chr6:27156417..27159630-chr6:27160529..27165919,7 | K562 | blood: | |
| 4 | chr6:27162610..27164330-chr6:27172522..27175063,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198374 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs1102568 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11753248 | 1.00[ASN][1000 genomes] |
| rs11753483 | 1.00[ASN][1000 genomes] |
| rs11757216 | 1.00[ASN][1000 genomes] |
| rs11965377 | 1.00[ASN][1000 genomes] |
| rs11965529 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11966985 | 1.00[ASN][1000 genomes] |
| rs11967073 | 1.00[ASN][1000 genomes] |
| rs11969536 | 1.00[ASN][1000 genomes] |
| rs11970261 | 1.00[ASN][1000 genomes] |
| rs2021277 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2893912 | 1.00[ASN][1000 genomes] |
| rs34979454 | 1.00[ASN][1000 genomes] |
| rs73738797 | 1.00[ASN][1000 genomes] |
| rs73740408 | 1.00[ASN][1000 genomes] |
| rs858978 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs858983 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948921 | chr6:26556890-27443957 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 472 gene(s) | inside rSNPs | diseases |
| 2 | esv3356749 | chr6:27155446-27163661 | Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | Chromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:27156800-27173000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
