Variant report

Variant	rs858993
Chromosome Location	chr6:27181395-27181396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12204768	0.83[ASN][1000 genomes]
rs2023467	0.83[ASN][1000 genomes]
rs3800305	0.83[ASN][1000 genomes]
rs3800306	0.83[ASN][1000 genomes]
rs67153537	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs858984	0.83[ASN][1000 genomes]
rs858985	0.83[ASN][1000 genomes]
rs858988	0.83[ASN][1000 genomes]
rs858992	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv970092	chr6:27177750-27181734	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27174400-27181400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:27177200-27181400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:27178000-27181400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:27178000-27181600	Weak transcription	GM12878-XiMat	blood
5	chr6:27179600-27182000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:27180000-27181400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:27180000-27181400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:27180600-27183600	Active TSS	K562	blood
9	chr6:27181000-27183000	Active TSS	A549	lung
10	chr6:27181000-27183400	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:27181000-27183400	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:27181200-27183000	Bivalent/Poised TSS	Placenta	Placenta
13	chr6:27181200-27183200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:27181200-27183400	Active TSS	H1 Cell Line	embryonic stem cell
15	chr6:27181200-27183400	Active TSS	H9 Cell Line	embryonic stem cell
16	chr6:27181200-27183400	Active TSS	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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