Variant report

Variant	rs859099
Chromosome Location	chr1:95329819-95329820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr1:95328709-95330139	SK-N-SH	brain:	n/a	chr1:95329619-95329630
2	YY1	chr1:95329586-95329877	HCT-116	colon:	n/a	n/a
3	TCF7L2	chr1:95329443-95329943	Hela-S3	cervix:	n/a	chr1:95329556-95329563
4	SP1	chr1:95329462-95329992	A549	lung:	n/a	n/a
5	POLR2A	chr1:95329424-95330018	U87	brain:	n/a	n/a
6	JUND	chr1:95327976-95330097	HCT-116	colon:	n/a	chr1:95328668-95328679 chr1:95329619-95329630
7	POLR2A	chr1:95329505-95329918	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr1:95329534-95329871	T-47D	breast:	n/a	chr1:95329825-95329835
9	STAT3	chr1:95329016-95330321	MCF10A-Er-Src	breast:	n/a	chr1:95329316-95329324 chr1:95330290-95330297 chr1:95329711-95329731
10	NFIC	chr1:95329446-95329957	ECC-1	luminal epithelium:	n/a	n/a
11	STAT3	chr1:95328919-95330281	MCF10A-Er-Src	breast:	n/a	chr1:95329316-95329324 chr1:95329711-95329731
12	FOSL2	chr1:95329557-95329943	MCF-7	breast:	n/a	chr1:95329619-95329630
13	POLR2A	chr1:95329585-95329933	U87	brain:	n/a	n/a
14	GABPA	chr1:95329525-95329856	A549	lung:	n/a	n/a
15	JUN	chr1:95329235-95330082	Hela-S3	cervix:	n/a	chr1:95329619-95329630
16	MYC	chr1:95328918-95329951	MCF10A-Er-Src	breast:	n/a	chr1:95329874-95329887 chr1:95329876-95329885
17	TCF12	chr1:95328656-95330166	SK-N-SH	brain:	n/a	n/a
18	RAD21	chr1:95329489-95329820	SK-N-SH_RA	brain:	n/a	n/a
19	GATA3	chr1:95328717-95329926	SK-N-SH	brain:	n/a	chr1:95328776-95328784 chr1:95329165-95329172 chr1:95329825-95329835
20	MXI1	chr1:95329573-95329963	Hela-S3	cervix:	n/a	n/a
21	USF1	chr1:95329588-95330101	SK-N-SH	brain:	n/a	n/a
22	TCF12	chr1:95328690-95330153	SK-N-SH	brain:	n/a	n/a
23	MAX	chr1:95329468-95329890	SK-N-SH	brain:	n/a	chr1:95329874-95329887 chr1:95329876-95329885
24	TEAD4	chr1:95329573-95330017	A549	lung:	n/a	n/a
25	POLR2A	chr1:95329541-95329939	HCT-116	colon:	n/a	n/a
26	EP300	chr1:95329351-95329865	SK-N-SH_RA	brain:	n/a	chr1:95329651-95329665 chr1:95329382-95329396
27	TEAD4	chr1:95329449-95329936	HepG2	liver:	n/a	n/a
28	JUND	chr1:95329467-95329905	A549	lung:	n/a	chr1:95329619-95329630
29	TEAD4	chr1:95328727-95330072	SK-N-SH	brain:	n/a	n/a
30	FOSL1	chr1:95328087-95330235	HCT-116	colon:	n/a	chr1:95328668-95328679 chr1:95329619-95329630
31	TAF1	chr1:95329536-95329930	SK-N-SH	brain:	n/a	n/a
32	USF1	chr1:95329437-95329947	A549	lung:	n/a	n/a
33	FOSL2	chr1:95329509-95329878	A549	lung:	n/a	chr1:95329619-95329630
34	RXRA	chr1:95328744-95330066	SK-N-SH	brain:	n/a	chr1:95329741-95329750 chr1:95329983-95329992
35	STAT3	chr1:95329488-95330283	MCF10A-Er-Src	breast:	n/a	chr1:95329711-95329731
36	EP300	chr1:95329248-95329903	SK-N-SH_RA	brain:	n/a	chr1:95329651-95329665 chr1:95329382-95329396
37	POLR2A	chr1:95329593-95329933	U87	brain:	n/a	n/a
38	CBX3	chr1:95329362-95330042	HCT-116	colon:	n/a	n/a
39	TEAD4	chr1:95329540-95329931	A549	lung:	n/a	n/a
40	YY1	chr1:95329295-95329913	SK-N-SH	brain:	n/a	n/a
41	POLR2A	chr1:95329257-95329993	MCF10A-Er-Src	breast:	n/a	n/a
42	RFX5	chr1:95329328-95329941	Hela-S3	cervix:	n/a	n/a
43	NR2F2	chr1:95329466-95329895	MCF-7	breast:	n/a	chr1:95329738-95329753
44	FOSL2	chr1:95328744-95330073	SK-N-SH	brain:	n/a	chr1:95329619-95329630
45	EP300	chr1:95329546-95329943	Hela-S3	cervix:	n/a	chr1:95329651-95329665
46	TEAD4	chr1:95329468-95329928	ECC-1	luminal epithelium:	n/a	n/a
47	STAT3	chr1:95329095-95330012	Hela-S3	cervix:	n/a	chr1:95329316-95329324 chr1:95329711-95329731
48	JUND	chr1:95329444-95329969	T-47D	breast:	n/a	chr1:95329619-95329630
49	POLR2A	chr1:95329616-95329920	MCF10A-Er-Src	breast:	n/a	n/a
50	FOS	chr1:95328840-95330133	MCF10A-Er-Src	breast:	n/a	chr1:95329724-95329735 chr1:95329619-95329630

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95321289..95323092-chr1:95328978..95330909,2	K562	blood:
2	chr1:95329686..95331729-chr1:95334435..95337235,2	K562	blood:

Variant related genes	Relation type
SLC44A3	TF binding region

rs_ID	r²[population]
rs859082	1.00[YRI][hapmap]

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95321400-95330600	Weak transcription	Brain Hippocampus Middle	brain
2	chr1:95326200-95331600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr1:95326600-95330800	Weak transcription	Brain Substantia Nigra	brain
4	chr1:95326600-95331800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:95326600-95332600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:95327200-95333200	Enhancers	Fetal Stomach	stomach
7	chr1:95327400-95330200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:95327400-95331000	Enhancers	HMEC	breast
9	chr1:95327400-95333200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:95327600-95330000	Enhancers	Small Intestine	intestine
11	chr1:95327600-95332800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr1:95327600-95332800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr1:95327800-95330200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:95327800-95330200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:95327800-95330200	Enhancers	Brain Anterior Caudate	brain
16	chr1:95327800-95330600	Enhancers	HepG2	liver
17	chr1:95327800-95330800	Enhancers	Fetal Muscle Trunk	muscle
18	chr1:95327800-95331400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:95327800-95331400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:95327800-95332000	Enhancers	Placenta	Placenta
21	chr1:95327800-95332400	Enhancers	H1 Cell Line	embryonic stem cell
22	chr1:95327800-95333000	Enhancers	H9 Cell Line	embryonic stem cell
23	chr1:95328000-95330000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr1:95328000-95330200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr1:95328000-95331400	Enhancers	Right Atrium	heart
26	chr1:95328000-95333000	Enhancers	Fetal Muscle Leg	muscle
27	chr1:95328000-95333200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr1:95328200-95330400	Enhancers	HSMMtube	muscle
29	chr1:95328200-95330800	Enhancers	Fetal Lung	lung
30	chr1:95328200-95330800	Flanking Active TSS	NHEK	skin
31	chr1:95328200-95331200	Enhancers	Left Ventricle	heart
32	chr1:95328200-95331200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr1:95328200-95332200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr1:95328200-95332200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr1:95328200-95332400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr1:95328400-95332400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr1:95328400-95333000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr1:95328600-95330000	Flanking Active TSS	Colon Smooth Muscle	Colon
39	chr1:95328600-95330000	Genic enhancers	Fetal Intestine Large	intestine
40	chr1:95328600-95330400	Enhancers	Skeletal Muscle Female	skeletal muscle
41	chr1:95328600-95330800	Enhancers	Spleen	Spleen
42	chr1:95328600-95331200	Enhancers	Adipose Nuclei	Adipose
43	chr1:95328600-95331400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr1:95328600-95332400	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr1:95328600-95333000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
46	chr1:95328800-95330000	Flanking Active TSS	HUVEC	blood vessel
47	chr1:95328800-95330400	Weak transcription	Aorta	Aorta
48	chr1:95328800-95330800	Flanking Active TSS	Osteobl	bone
49	chr1:95328800-95331000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr1:95328800-95332400	Enhancers	Brain Germinal Matrix	brain

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